Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02223 ATGAAGATCGAGTATTTGGAGGACCAGGCGTCTGACGGGGAGGATGAAGTTTTTGATACTCAAATTGCCAAGGCTGATGCTAAGAGAGCATTAGTTGGAGCGGGGGCGAGGATCCTGTTTTATCCGACTCTTTTGTATAATGTGGTTCGGAATAAGATTGAATCTGAATTCAGATGGTGGGATGAAGTTGATCAGTTTCTTCTTTTAGGTGCTGTTCCCTTTCCTAAAGATGTTCCTCGGCTGAAGCAGCTGGGCGTTGGTGGAGTCATCACTCTGAACGAATCTTATGAAACTCTCGTTCCATCATCCTTGTATCATAGCCATGGCATTGACCATTTAACGATTCCGACAAGAGATTATTGTTTTGCTCCTAAATTTGCAGATATAAGCCGAGCAGTTGACTTTATTCATAAAAATGCATCCTGTGGGAAAACTACATACGTTCATTGCAAAGCAGGAAGAGGGAGGAGCACGACTATTGTCCTCTGCTATTTGGTTAAGTATAAAGACATGACGCCTGTTGGGGCCTTAGATTATGTTCGATCGAGGAGGCCTCGTGTTTTGTTGGCACCCTCGCAATGGGAGCAGGCAGTTCAAGAATATAGCAATCGCCTCCCCCCAACAGGCGCATACTCTCCCTCGAGAGATGCAGTTCTCGTCACAAAAGCCGACCTCGATGGCTATTATGCAAATGGCACTGACGTTTCTGGTAAAGAGTTGGCACTTGTCCCTAACGGGGCAAAAACTAAGCCAATGATAGCCAAGCTGTCTTGTCTTTTTGCATCCTTGAAAGTTAATGGGAGTGGCTCAGTTGCAAGACGGATGCCTGTGCCGGAAGCTCGAGCTTGCTGA 852 46.13 MKIEYLEDQASDGEDEVFDTQIAKADAKRALVGAGARILFYPTLLYNVVRNKIESEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNESYETLVPSSLYHSHGIDHLTIPTRDYCFAPKFADISRAVDFIHKNASCGKTTYVHCKAGRGRSTTIVLCYLVKYKDMTPVGALDYVRSRRPRVLLAPSQWEQAVQEYSNRLPPTGAYSPSRDAVLVTKADLDGYYANGTDVSGKELALVPNGAKTKPMIAKLSCLFASLKVNGSGSVARRMPVPEARAC 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23264477 23266553 - Bpe010040.1 Bpe02g02223 100372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02223 283 Gene3D Protein tyrosine phosphatase superfamily 59 206 IPR029021 -
Bpe02g02223 283 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Bpe02g02223 283 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 199 IPR029021 -
Bpe02g02223 283 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Bpe02g02223 283 SMART dsp_5 62 204 IPR020422 GO:0006470|GO:0008138
Bpe02g02223 283 CDD PTPMT1 59 204 IPR044596 GO:0004721
Bpe02g02223 283 Pfam Dual specificity phosphatase, catalytic domain 80 198 IPR000340 GO:0008138|GO:0016311
Bpe02g02223 283 PANTHER - 12 283 - -
Bpe02g02223 283 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Bpe02g02223 283 PANTHER OS01G0739200 PROTEIN 12 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02223 - - - mnt:21390393 440.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02223 Bpe-Chr2:23264477 Bpe11g00633 Bpe-Chr11:4899074 6.83E-102 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g246 Blo01g00533 . Bda01g02034 . . Bpe02g02223 . . . . Cma05g01379 Cma12g01280 Car05g01293 Car12g01250 . . . . . . . . . . Cla11g00178 Cam11g0207 Cec11g0207 Cco11g0221 Clacu11g0342 Cmu11g0192 Cre11g0690 . . . . . Csa02g00073 Chy05g01416 . . . . . . . Bma01g00214 . Sed04g1684 Cmo05g01381 Cmo12g01314 . . . . Cpe11g01148 Cpe07g01040 Bhi06g01678 Tan08g0100 Cmetu05g1458 . Hepe08g2635 . . . . . . . . . Lsi11g00210 . . Cme05g02021
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006019 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 38