Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02225 ATGTCGTGGCAAACGTATGTCGATGAACATTTGATGTGCGACATCGAAGGAAATAAGCTCACTGCAGCTGCAATCATTGGGCATGATGGGAGCGTTTGGGCCCAAAGCTCCACCTTCCCTCAGTTCAAGCCTGAAGAAATAACTGGGATTATGAATGACTTTGCTGAGCCTGGAACACTTGCTCCAACTGGCTTGTACCTTGGAAGTGCAAAATATATGGTGATCCAAGGCGAGCCAGGAGCTGTTATTCGTGGGAAGAAGGGTCCTGGTGGTGTCACTGTTAAAAAGACAGGTCTGGCCTTAATCATCGGTATATATGATGAGCCAATGACGCCTGGTCAATGCAACATGATTGTCGAAAGGCTTGGAGATTATCTCATCGAACAGGGTCTCTAG 396 47.22 MSWQTYVDEHLMCDIEGNKLTAAAIIGHDGSVWAQSSTFPQFKPEEITGIMNDFAEPGTLAPTGLYLGSAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALIIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23277124 23278969 + Bpe010042.1 Bpe02g02225 100374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02225 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Bpe02g02225 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Bpe02g02225 131 SMART prof_2 1 131 IPR005455 GO:0003779
Bpe02g02225 131 PANTHER PROFILIN 1 131 - -
Bpe02g02225 131 CDD PROF 2 130 IPR005455 GO:0003779
Bpe02g02225 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Bpe02g02225 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Bpe02g02225 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Bpe02g02225 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Bpe02g02225 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Bpe02g02225 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02225 K05759 PFN; profilin - qsu:111995052 244.202
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02225 Bpe08g00505 CCT
Bpe01g00568 Bpe02g02225 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00404 Bpe-Chr4:2541708 Bpe02g02225 Bpe-Chr2:23277124 7.75E-06 transposed
Bpe01g00568 Bpe-Chr1:3681794 Bpe02g02225 Bpe-Chr2:23277124 1.98E-74 wgd
Bpe13g01272 Bpe-Chr13:17925914 Bpe02g02225 Bpe-Chr2:23277124 1.57E-90 wgd
Bpe02g02225 Bpe-Chr2:23277124 Bpe08g00505 Bpe-Chr8:3342294 1.48E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g251 . . . . Bpe01g00568 Bpe02g02225 . Bma11g00549 . . . . Car05g01289 . . . . . . . . . . . . . . . . . . . . Cone4ag0756 . . Csa02g00079 Chy05g01410 . Blo08g00324 . Bda02g00405 . Bpe08g00505 . . . Sed11g0035 Cmo05g01378 . . . . . Cpe11g01145 . Bhi06g01686 Tan08g0107 Cmetu05g1788 . Hepe08g2631 . . . . . . . . . Lsi11g00216 . . Cme05g02014
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT2G37620 96.6 8.6e-215 742.7
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT2G37620 96.6 8.6e-215 742.7
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT2G37620 96.3 4.3e-214 740.3
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.3e-214 739.6
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.3e-214 739.6
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.1e-213 738.0
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT2G37620 79.0 6.8e-119 424.1
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.2e-213 738.8
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.8e-213 737.6
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.6 3.6e-213 737.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.8e-212 734.9
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.0 1.8e-212 734.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.0e-211 731.5
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT5G59370 79.0 2.9e-117 418.7
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.2e-213 738.8
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.6e-213 738.4
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 3.6e-213 737.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.1e-213 736.1
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.3 8.1e-213 736.1
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 8.9e-212 732.6
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G46520 79.4 9.8e-118 420.2
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.7e-215 745.0
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.0e-215 744.2
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.0e-215 744.2
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 5.1e-215 743.4
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.5e-214 741.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.8e-213 737.6
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G12110 79.4 6.8e-119 424.1
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.8 1.4e-209 725.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.4e-209 724.5
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.1e-209 723.0
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.1e-208 721.5
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G18780 91.8 4.6e-208 720.3
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.0e-208 719.9
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G18780 77.0 1.4e-116 416.4
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.1 4.9e-210 726.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.4e-209 724.5
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.4e-209 723.4
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.1e-209 723.0
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.6e-208 721.8
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.1e-208 721.5
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT1G49240 77.0 1.4e-116 416.4
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.4e-217 751.1
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT5G09810 96.8 1.5e-214 741.9
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT5G09810 96.3 7.3e-214 739.6
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT5G09810 96.6 7.3e-214 739.6
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.2e-213 738.8
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.6e-213 737.3
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT5G09810 79.4 8.9e-119 423.7
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT2G19760 77.1 4.4e-57 217.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT2G19760 76.3 5.8e-57 216.9
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT2G19760 75.9 4.1e-55 210.7
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT2G19760 74.4 6.0e-54 206.8
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.7e-56 214.2
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT4G29350 76.3 8.3e-56 213.0
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.4e-55 212.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 9.2e-55 209.5
Bpe02g02225 BCT,CCT 1 87 Cytoskeleton Gene Families AT5G56600 79.3 1.4e-37 152.1
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT4G29340 79.1 2.3e-61 231.5
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT4G29340 78.4 2.0e-60 228.4
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT4G29340 74.6 4.5e-57 217.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT4G29340 74.6 7.7e-57 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112