Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02242 ATGTTAAACTCAGCTACTGAGTCAAGTGCCACCCACTCGTCTTCCTCCCCTAGCTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGGACCCGACCTGAAGAAGAGTAAGCGAACCCGAGATAGTAACGGTAAACACCCGGTTTACAGAGGAGTACGGATGCGGGTTTGGGGAAAATGGGTATCTGAAATCCGAGAACCCAGAAAGAAGAGCCGGATTTGGCTCGGAACTTTTTCGACGCCGGAAATGGCGGCCAGAGCTCATGATGTCGCTGCTTTAACTATCAAGGGGAAATCGGCGATCCTCAACTTTCCAGAAATGGCAGGAATACTTCCTCGGCCGTCTTCGAACTCTCCCCGTGACGTTCAAGCCGCCGCTGCTCTGGCCGCTTCAATGGAGGTTCTTCCGGCGACTCCTCCAGATTCGTCACATCCCCCGACGTCTGAACCGTCATCTTCATCATCCTCATTCAACGTTCCATCTCCGGAGGAACTGAGTGAGATAGTTCAACTTCCTAGTTTAGGAACGAGCTATGAATCGCCAGAGTCGCAATTCGTGCTCCATGACTCAGAAGATCGGTGGCTTTACACAGAGAATTACGAGTACTTCGGTGATCAGATATCAATGGCGGAGACAGAAAGCTTCGATTTTTTCTTTTGGCGCCATTAA 669 50.07 MLNSATESSATHSSSSPSCSSSSSSSSSSGPDLKKSKRTRDSNGKHPVYRGVRMRVWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGKSAILNFPEMAGILPRPSSNSPRDVQAAAALAASMEVLPATPPDSSHPPTSEPSSSSSSFNVPSPEELSEIVQLPSLGTSYESPESQFVLHDSEDRWLYTENYEYFGDQISMAETESFDFFFWRH 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23393593 23394261 - Bpe010058.1 Bpe02g02242 100391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02242 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 202 - -
Bpe02g02242 222 MobiDBLite consensus disorder prediction 33 47 - -
Bpe02g02242 222 MobiDBLite consensus disorder prediction 1 47 - -
Bpe02g02242 222 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Bpe02g02242 222 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 4 202 - -
Bpe02g02242 222 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Bpe02g02242 222 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Bpe02g02242 222 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Bpe02g02242 222 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Bpe02g02242 222 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Bpe02g02242 222 MobiDBLite consensus disorder prediction 1 32 - -
Bpe02g02242 222 CDD AP2 49 106 IPR001471 GO:0003700|GO:0006355
Bpe02g02242 222 MobiDBLite consensus disorder prediction 135 162 - -
Bpe02g02242 222 MobiDBLite consensus disorder prediction 147 162 - -
Bpe02g02242 222 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00552 Bpe-Chr1:3582125 Bpe02g02242 Bpe-Chr2:23393593 2.46E-65 dispersed
Bpe02g02242 Bpe-Chr2:23393593 Bpe13g01287 Bpe-Chr13:18029116 6.16E-96 dispersed
Bpe02g02241 Bpe-Chr2:23387605 Bpe02g02242 Bpe-Chr2:23393593 1.02E-105 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21045 PF00847 AP2 2.40E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02242 K09286 - tcc:18588535 232.646