Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02248 TCGAATTTTAATTCGATGGGTGAAGGAGAGGCGGCTGATTCAGTTCAAGAAAAGACTCGGCCAGATGGTGCGACACCCAGTGACGCTACTTCGTCAGAAGTACCAGCTAAAAAGCTCGCGAGGCAGCTGGACTTTACGGGCTTTGGGAGGATGTCCGCGAGTGTGGTCTTGCCTGAGCATCCTCAGCCTCAATCTCAGGTACAGTTGCAGTCGCGTTCTCAGTTGCCAGCTGTGGTGGCACCTGCGCCCCCGAGCCAGCCTCAGTTGCAGCCGCCTCAAAAACCAGACTCCCCAAAGTCAAGGCCACGATCCAACGTTGAAGTAAAAGATTGTACTCCAAAGAAGCAAAAACAGTGTAATTGTAAACACTCACGGTGCTTAAAGTTGTATTGTGAGTGTTTTGCATCTGGAATATATTGCGATGGTTGTAACTGCATTAACTGCTATAATAATGTTGAAAATGAAGCTGCTAGGCGTGAAGCAGTTGAATCCACTTTGGAACGTAATCGAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCACACGGGACACGTGATGTTAGGGAAGAAGCTGGAGAGGTTCTAGTGTTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGGTGCCTAAAAAAGTACTGCGAGTGTTTTCAGGCCAACATTCTCTGCTCTGACAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGGCAAGCTCTATTCCATGGGGACCATGGAAATAACATTGCATATATACAGCAGGCAGCTAATGCTGCTATAACTGGAGCTATTGGATCCTCGGGATATGCATCCCCTCCGGTGTCAAAGAAACGGAAAGGACACGAGCTTTTCTTTGGGTCAACGCCCAAAGATTCGTCCATTCATAGGCTGGCGCAATTTCAACAGGCAAATCAGATTAGAACTTCTGCGGCCTCCTTGCCTTCAATCCCTGTTACTCGAGCTGGTTCCAATGCAGCATTGGCCCCCTCAAAGTTCACTTACGGATCATTATTAGCAGACATCATCCAACCACAGGATTCGATGGAGCTCTGCTCTGTATTAGTTGTTCTGTCAAATCAAAGAAATGCTACAGAAATGGGGGCTGACAATCAAACACAAAGTCGCCTTGCTTTCGCAACTCATGAGAGGCTGCAGGGTCAAAAGATATCTGTGGAGAAAGCTGTAGAAGACGATTGTTCTAGTGCAAATCAGGCTCATAAAATCAGCGCGGATAATCCAAGTTCAGATGGAGCAGATGTACCGAAAGGTAGGCCCATGTCTCCGGGAACTTTAGCTTTGATGTGCAATGAAGAAGACACGATGTTTATAGCAGCTGCTTCACCTAATGGGATAATGGGTCATGGATGCACTGCATCATCGCAATTGTCTTATGGACAAGACATGTCGGAAATCTACGCAGAGCAAGAACAGATAATCTTGACAACATTTCGTGATTGTCTTAATAAGCTCATAACTTTTGGCGAGATAAAAGGCAAGTTATTTCTTTTTTTCTCCATCTGTTGA 1542 45.72 SNFNSMGEGEAADSVQEKTRPDGATPSDATSSEVPAKKLARQLDFTGFGRMSASVVLPEHPQPQSQVQLQSRSQLPAVVAPAPPSQPQLQPPQKPDSPKSRPRSNVEVKDCTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENEAARREAVESTLERNRNAFRPKIASSPHGTRDVREEAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNIAYIQQAANAAITGAIGSSGYASPPVSKKRKGHELFFGSTPKDSSIHRLAQFQQANQIRTSAASLPSIPVTRAGSNAALAPSKFTYGSLLADIIQPQDSMELCSVLVVLSNQRNATEMGADNQTQSRLAFATHERLQGQKISVEKAVEDDCSSANQAHKISADNPSSDGADVPKGRPMSPGTLALMCNEEDTMFIAAASPNGIMGHGCTASSQLSYGQDMSEIYAEQEQIILTTFRDCLNKLITFGEIKGKLFLFFSIC 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23422725 23426677 + Bpe010064.1 Bpe02g02248 100397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02248 513 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 29 90 - -
Bpe02g02248 513 MobiDBLite consensus disorder prediction 408 429 - -
Bpe02g02248 513 ProSiteProfiles CRC domain profile. 115 239 IPR005172 -
Bpe02g02248 513 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 91 504 - -
Bpe02g02248 513 MobiDBLite consensus disorder prediction 58 75 - -
Bpe02g02248 513 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 116 151 IPR005172 -
Bpe02g02248 513 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 202 236 IPR005172 -
Bpe02g02248 513 PANTHER TESMIN/TSO1-RELATED 91 504 IPR028307 -
Bpe02g02248 513 SMART CXC_2 114 154 IPR033467 -
Bpe02g02248 513 SMART CXC_2 199 240 IPR033467 -
Bpe02g02248 513 MobiDBLite consensus disorder prediction 1 38 - -
Bpe02g02248 513 MobiDBLite consensus disorder prediction 54 109 - -
Bpe02g02248 513 MobiDBLite consensus disorder prediction 80 98 - -
Bpe02g02248 513 PANTHER TESMIN/TSO1-RELATED 29 90 IPR028307 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g02248 Bpe13g01292 CCT
Bpe02g02248 Bpe13g01292 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02248 Bpe-Chr2:23422725 Bpe03g00619 Bpe-Chr3:26441838 1.07E-33 dispersed
Bpe13g01292 Bpe-Chr13:18074680 Bpe02g02248 Bpe-Chr2:23422725 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21046 PF03638 TCR 2.40E-12 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02248 - - pvy:116116804 679.863