Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02261 ATGCCATTGGCATTAACACAGTTTGAGGCCCTATGTAGGTTTATAAGCTCCAAGAAAAGGAAGTTGACCATTAAAGAAGAGCTGGTGCTCAGATTAGAGAGCCAATATCCTGCTGATGTTGGCCTGATTGCAGCTTTCTTCCTCAACTATGTGAAGCTGAATTACGGTGAAGCAATATATTTAGGGCCAAATGAACCTCGTGCATACATCTCAGGTGAATGCATCGAGTGCATGGCAGCCTCTGACAATGTGGTTCGTGCTGGGCTTACCTCAAAGAGGCAGGATATTCAAACACTTCTCTCTATGCTCAAATATAAACAGGGTTTTCCTGTAATTCTTCAAGGAGTTTCTCTGAATCCATACACGAAAAGGTATCTCCCTCCATTTGAGGAGTTTGAAGTTGACCGTTGCATTCTCCCACCTGCTGCATCAGTAGAGATTTCCTCTGTCTCAGGACCATCTCTTTTTCTTTGCATGGCTGGGAAAGGAACAATTATTTCAAACATTTGA 510 42.94 MPLALTQFEALCRFISSKKRKLTIKEELVLRLESQYPADVGLIAAFFLNYVKLNYGEAIYLGPNEPRAYISGECIECMAASDNVVRAGLTSKRQDIQTLLSMLKYKQGFPVILQGVSLNPYTKRYLPPFEEFEVDRCILPPAASVEISSVSGPSLFLCMAGKGTIISNI 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23483434 23485166 + Bpe010078.1 Bpe02g02261 100410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02261 169 Gene3D Jelly Rolls 112 168 IPR014710 -
Bpe02g02261 169 Gene3D Phosphomannose Isomerase, domain 2 4 109 - -
Bpe02g02261 169 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 17 167 - -
Bpe02g02261 169 Pfam Phosphomannose isomerase type I C-terminal 125 166 IPR046456 -
Bpe02g02261 169 PRINTS Phosphomannose isomerase type I signature 86 105 IPR016305 GO:0004476|GO:0009298
Bpe02g02261 169 PRINTS Phosphomannose isomerase type I signature 67 86 IPR016305 GO:0004476|GO:0009298
Bpe02g02261 169 PRINTS Phosphomannose isomerase type I signature 48 67 IPR016305 GO:0004476|GO:0009298
Bpe02g02261 169 PRINTS Phosphomannose isomerase type I signature 32 47 IPR016305 GO:0004476|GO:0009298
Bpe02g02261 169 SUPERFAMILY RmlC-like cupins 2 165 IPR011051 -
Bpe02g02261 169 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 17 167 IPR016305 GO:0004476|GO:0009298
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02261 K01809 manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8] - csv:101220595 243.817
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02261 Bpe-Chr2:23483434 Bpe13g01296 Bpe-Chr13:18112959 3.00E-90 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g329 Blo01g00502 . Bda01g02070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02261 . . . Cmo04g02163 Cmo15g00956 Cma04g02066 Cma15g00917 Car04g02006 Car15g00860 Cpe13g00402 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025120 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2