Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02263 TCAAGCAAAACATGCTTGTCTTTGGCAATCTCACGGATCAAATTGCTGCAAAACAAGAGAGATTTGCATCTGAAACAAATGCGCAAAGAGATAGCACAATTCCTTCAGGCTGGCCAAGAAGCTATAGCTCGGATTCGTGTGGAGCATGTTATACGGGAACAAAACATGTGGGCTGCTTATGAGATTTTAGAACTATTTTGTGAGTTTGTTCTTGCAAGAGTTCCTATTATTGAAAGTCAAAGAGAATGCCCAACAGAATTAAGAGAAGCTGTTTCCAGCATTATATTTGCTGCTCCTAGATGTTCGGATCTTCCAGATTTATTGCAGTTGAAGAATATGTTCACTACAAAATATGGAAAAGAATTTATTTCCGCTGTGTCTGAGCTTCGTCCTGATTCTGGTGTTAACCGTACTGTTAGTATAATCGAGAAGCTTTCAGTTATTGCACCACCTGGACATATAAAGCTAAAGGTATTAAAGGAAATAGCTGTGGAGTACAAAGTGAATTGGGATTCTTCCGATGCCGAAGCAGAATTCAGTAAAACACATGAGGATCTTCTGGGTGGAGCAAAGGACATACGGGGATCTTCCCTTTCACAAGCTCCCATCAGGAAGGACTCACTCAAATCTTCGACTTCCAATGGAGCTGATAGAATCGAACCAGTAGACGTTAAACAAGCTTATGCATCAAGACCTATTAGCGAAAAACCTTCATCGACTACAAAAGAAATCGAACCAATATTTAAAGATGAGGTTACAGGAAAAATAAACGATGTGAAAAGAGATGGAAGACCACAGTCATCTGATGTCCTAGAAAGAGCTCGAGCAGCCATCGCCTCTGCCGAACGAGCAGCTGCCGCCGCCCGTGCTGCAGCCGGGCTTGTGAACACCGAGGGAGGAAGGTCCGTCTTACAA 915 42.62 SSKTCLSLAISRIKLLQNKRDLHLKQMRKEIAQFLQAGQEAIARIRVEHVIREQNMWAAYEILELFCEFVLARVPIIESQRECPTELREAVSSIIFAAPRCSDLPDLLQLKNMFTTKYGKEFISAVSELRPDSGVNRTVSIIEKLSVIAPPGHIKLKVLKEIAVEYKVNWDSSDAEAEFSKTHEDLLGGAKDIRGSSLSQAPIRKDSLKSSTSNGADRIEPVDVKQAYASRPISEKPSSTTKEIEPIFKDEVTGKINDVKRDGRPQSSDVLERARAAIASAERAAAAARAAAGLVNTEGGRSVLQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23518606 23522166 + Bpe025212 Bpe02g02263 100412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02263 305 Gene3D - 1 177 IPR042277 -
Bpe02g02263 305 Pfam Regulator of Vps4 activity in the MVB pathway 3 169 IPR005061 GO:0015031
Bpe02g02263 305 PANTHER IST1 FAMILY MEMBER 3 296 IPR005061 GO:0015031
Bpe02g02263 305 MobiDBLite consensus disorder prediction 198 245 - -
Bpe02g02263 305 Coils Coil 271 291 - -
Bpe02g02263 305 MobiDBLite consensus disorder prediction 200 217 - -
Bpe02g02263 305 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 3 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02263 - - - pxb:103947631 373.244
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00526 Bpe02g02263 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00192 Bpe-Chr2:1329313 Bpe02g02263 Bpe-Chr2:23518606 4.80E-76 dispersed
Bpe02g02263 Bpe-Chr2:23518606 Bpe04g00378 Bpe-Chr4:2383606 2.61E-76 dispersed
Bpe01g00526 Bpe-Chr1:3401993 Bpe02g02263 Bpe-Chr2:23518606 1.35E-18 wgd
Bpe10g00940 Bpe-Chr10:14966403 Bpe02g02263 Bpe-Chr2:23518606 6.94E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g316 . . . . . . . . . . . . . . . . Cpe01g01794 . . . . . . . . . . . . . . . . . . . . . Cme10g01545 . . . . . Bpe02g02263 Bma01g00173 . . Cmo04g02154 . Cma04g02057 . Car04g01997 . . . . . . . . . . . . . . . . . . Csa05g01489 . .
Vvi11g351 . . . . Bpe01g00526 Bpe02g02263 . Bma11g00511 Cmo10g00648 Cmo11g00608 . . . . Sed08g0753 Cpe04g01136 Cpe18g00440 Bhi02g01121 Tan09g1297 Cmetu01g1077 . Hepe09g0751 . . . . . . . . . . Cone16ag0689 Cone4ag0724 . Lsi06g00882 . . Cme02g01344 Blo08g00286 Blo14g00488 . Bda09g01157 . . Bma01g00173 . . . . Cma10g00608 Cma11g00604 Car10g00564 Car11g00482 . . . . . . . . . Cla06g00841 Cam06g0907 Cec06g0915 Cco06g0944 Clacu06g0908 Cmu06g0874 Cre06g1657 . Csa01g02042 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011875 1 1 0 1 1 1 1 1 2 1 2 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30