Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02281 ATGGCTGGGGAGATGGGTTTCAAACAGTACGTTGAGGCGTTAAAGGAAGAACGACGGAAAATTACGGTTTTCCAGCGGGAACTGCCGCTCTGTTTAGAACTTATCACGCAAGCGATTGAGTCTTGTACGCAGCAGTTGTCAGGGACGACGACGGAGTGTTTTAATGGAGGACAATCCGAGTGCTCGGAGCAGACTTCCAGTGAAGGTCCCGTGTTGGAGGAATTTATCCCGGTTAAAAGAGCTCTATCTTCTGAGTTCTCCGGCGAAGAGAAAAAATCCCTGAAAATGAGAAAGGAGAGCAAGAATAGCGACAAGAAGAAAGCTGGTCAGTCGGATTGGCTCAAATCTGCTCAGCTATGGAATCAAGCTCCAGATCCTGACGGTGTACCGACCAAGACGGTGGTTGTGGAAGTTAAGAGGAATGGCGGAGCTTTCCGGCCATTCCACCGAGAGAAAGTCATCGAAAAGACAAACCAACCCGACGGAAAAGCACCGACGGCAAATGCAAGATCAACGGCGGAAACATCTTCTCATAGCAGCATCAGACGAGAAGAGAAAGACGAACAGGGTAAAAGAAAGAACCGGCGGTGCTGGTCACCGGAGCTGCATCGCCGATTCTTGCGCGCTCTTCACCAGCTCGGAGGATCAAACGTGGCGACGCCAAAGCAGATTAGAGAACTGATGAAATTGGATGGTCTAACAAACGACGAAGTCAAAAGCCATTTACAGAAATATCGTTTGCATACCAGAAGATCGAGTCCTCCGGCGTTTAACAGTAGCGTCCAACCGTCGCCACAATATGTGGTAGTGGGTGGAATATGGGTGCCACCGCCGGACTTTGCGGTGGCACCGGCGAGCACTGTTACCAGCGAGGCTAATGGAATGTACGTGGTACCAGCTTCGGTATCGGAGGCTTCAGGTTGTGGGGTTAAAAGGCCACAACCAAAACGATTAGCTGAGACGAACTCTGAAGGAAGAAAGGTCAGCGAAGGTGGAGATGGTGTTGTCCATTCTAATTCTCCGGCGACGTCGTCTTCCACCCACACTTCCACAGCATCCCCGTTTCTTTGA 1071 50.61 MAGEMGFKQYVEALKEERRKITVFQRELPLCLELITQAIESCTQQLSGTTTECFNGGQSECSEQTSSEGPVLEEFIPVKRALSSEFSGEEKKSLKMRKESKNSDKKKAGQSDWLKSAQLWNQAPDPDGVPTKTVVVEVKRNGGAFRPFHREKVIEKTNQPDGKAPTANARSTAETSSHSSIRREEKDEQGKRKNRRCWSPELHRRFLRALHQLGGSNVATPKQIRELMKLDGLTNDEVKSHLQKYRLHTRRSSPPAFNSSVQPSPQYVVVGGIWVPPPDFAVAPASTVTSEANGMYVVPASVSEASGCGVKRPQPKRLAETNSEGRKVSEGGDGVVHSNSPATSSSTHTSTASPFL 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23606081 23607633 - Bpe010098.1 Bpe02g02281 100430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02281 356 MobiDBLite consensus disorder prediction 336 356 - -
Bpe02g02281 356 SUPERFAMILY Homeodomain-like 191 251 IPR009057 -
Bpe02g02281 356 MobiDBLite consensus disorder prediction 304 356 - -
Bpe02g02281 356 PANTHER TRANSCRIPTION FACTOR HHO2 7 351 - -
Bpe02g02281 356 MobiDBLite consensus disorder prediction 177 196 - -
Bpe02g02281 356 Pfam Myb-like DNA-binding domain 195 246 IPR001005 -
Bpe02g02281 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 250 IPR017930 -
Bpe02g02281 356 MobiDBLite consensus disorder prediction 86 111 - -
Bpe02g02281 356 MobiDBLite consensus disorder prediction 161 176 - -
Bpe02g02281 356 MobiDBLite consensus disorder prediction 146 196 - -
Bpe02g02281 356 Gene3D - 192 250 - -
Bpe02g02281 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 351 IPR044787 GO:0003700|GO:0006355
Bpe02g02281 356 MobiDBLite consensus disorder prediction 86 112 - -
Bpe02g02281 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 193 248 IPR006447 GO:0003677
Bpe02g02281 356 MobiDBLite consensus disorder prediction 317 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02281 - - - tcc:18610532 360.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02281 Bpe13g01332 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02047 Bpe-Chr2:22036990 Bpe02g02281 Bpe-Chr2:23606081 3.43E-58 dispersed
Bpe02g02281 Bpe-Chr2:23606081 Bpe13g01076 Bpe-Chr13:16340578 9.20E-62 dispersed
Bpe13g01332 Bpe-Chr13:18565463 Bpe02g02281 Bpe-Chr2:23606081 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe02g02281 CCT 2 243 G2-like Transcription Factor Family AT1G25550 54.1 2.8e-61 232.3
Bpe13g01332 CCT 1 253 G2-like Transcription Factor Family AT1G25550 52.9 6.9e-60 227.6
Bpe13g01332 CCT 1 295 G2-like Transcription Factor Family AT1G13300 50.2 2.0e-61 233.0
Bpe08g00093 . 1 269 G2-like Transcription Factor Family AT3G46640 51.1 1.3e-62 236.9
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 2.0e-72 269.2
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT5G05090 51.7 5.4e-70 261.2
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.0e-62 234.6
Bpe14g00844 . 6 293 G2-like Transcription Factor Family AT4G13640 54.4 1.1e-55 213.8
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe11g01644 . 1 191 G2-like Transcription Factor Family AT1G69580 50.3 1.3e-41 167.2
Bpe15g00926 CCT 1 279 G2-like Transcription Factor Family AT1G79430 54.4 4.2e-70 261.9
Bpe07g00477 CCT 1 274 G2-like Transcription Factor Family AT1G79430 58.5 4.1e-65 245.4
Bpe12g00030 . 1 221 G2-like Transcription Factor Family AT1G79430 55.9 7.0e-57 218.0
Bpe13g00855 . 36 201 G2-like Transcription Factor Family AT1G79430 61.3 4.6e-40 162.2
Bpe08g00040 . 66 302 G2-like Transcription Factor Family AT2G01060 54.4 7.4e-55 210.7
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 4.7e-95 344.7
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT3G10760 63.2 3.1e-91 332.0
Bpe02g00025 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 5.4e-64 241.1
Bpe04g00533 . 1 208 G2-like Transcription Factor Family AT2G40970 62.4 1.2e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21049 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Bpe TF