Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02304 ATGAGAGCAGGGAAATCGAATCAGGAAGAAGACGAGTTTGAGGAGGAAGACTTCATTTCCAACAAAGAAGGCCCTTCTTCGACTTCTATTTCTAACATTAGTAGCAACACCAAAGATGCTAAGAACAACGATAAGGCTAATGCAATACGGTCCAAGCATTCTGTTACAGAGCAGCGAAGACGAAGCAAGATCAACGAGAGGTTCCAGATGTTGAGAGATCTGATACCTCATAGTGATCAAAAGAGAGATACAGCATCTTTCCTTCTGGAGGTGATCGAGTATGTTCAGTATTTACAGGAAAAGGTGCAGAAGTATGAGGGTTCATGCCCGATCTGGAATGGAGAGCCTTCCAAATTAATGCCATGGAGAAATAGTCATTGGCGGGTCCAGAGTTTTGCCCGTCAATCATCTACCGTAAATAACGGTTCATTCCCGGGATTAACATTTCTGGGTAAAGTTGACGATAATAATATTCCGGTCCCTCAGAACCTGGAAGATTCCCTTGCGAACAGGGGCGTAGGTGATATTTCAAGTATAGGGGCCGCTTTGCAAGTTCCTATGCAGGTGAATGTCTCGTCTTCTGTCCGAAGCGATGGAATGGCTGCTCAGCCTCTTCAAATCCCGGCTTCTGATGCACCCTCAACTGACTGTCTAGTCACATCTGAGCCATTAAACCAGCCGGAGGAGGTGAATATAGAAGGCGGAACTATTAGAATTTCAAGTCCTTACTCAGAAGGGTTGCTAAATAACTTAACTCAAGCCCTCCAGGATGCTGGGGTGGATCTATCTCAGGCCAGCATCTCTATTCAGATCGCTATAGGAAAGAATGCAAACAAAGCACCACCTTTCAGAACATCTGTTTTTAAGGTATTGCTTTCAGAGTAA 885 44.63 MRAGKSNQEEDEFEEEDFISNKEGPSSTSISNISSNTKDAKNNDKANAIRSKHSVTEQRRRSKINERFQMLRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSCPIWNGEPSKLMPWRNSHWRVQSFARQSSTVNNGSFPGLTFLGKVDDNNIPVPQNLEDSLANRGVGDISSIGAALQVPMQVNVSSSVRSDGMAAQPLQIPASDAPSTDCLVTSEPLNQPEEVNIEGGTIRISSPYSEGLLNNLTQALQDAGVDLSQASISIQIAIGKNANKAPPFRTSVFKVLLSE 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23736165 23738146 + Bpe010121.2 Bpe02g02304 100453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02304 294 SMART finulus 54 104 IPR011598 GO:0046983
Bpe02g02304 294 MobiDBLite consensus disorder prediction 43 63 - -
Bpe02g02304 294 MobiDBLite consensus disorder prediction 1 63 - -
Bpe02g02304 294 Pfam Helix-loop-helix DNA-binding domain 50 99 IPR011598 GO:0046983
Bpe02g02304 294 Gene3D - 46 110 IPR036638 GO:0046983
Bpe02g02304 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Bpe02g02304 294 CDD bHLH_AtBIM_like 47 123 - -
Bpe02g02304 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 117 IPR036638 GO:0046983
Bpe02g02304 294 PANTHER TRANSCRIPTION FACTOR BIM2 1 288 - -
Bpe02g02304 294 MobiDBLite consensus disorder prediction 22 42 - -
Bpe02g02304 294 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 288 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02304 Bpe-Chr2:23736165 Bpe03g00724 Bpe-Chr3:27356221 4.04E-09 dispersed
Bpe11g00039 Bpe-Chr11:277454 Bpe02g02304 Bpe-Chr2:23736165 5.75E-50 transposed
Bpe13g01369 Bpe-Chr13:18949327 Bpe02g02304 Bpe-Chr2:23736165 2.89E-124 transposed
Bpe02g02304 Bpe-Chr2:23736165 Bpe07g00745 Bpe-Chr7:13981120 2.88E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21053 PF00010 HLH 2.30E-13 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02304 - - csv:101217750 332.028