Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02307 ATGGGGAGGGGTAGGGTTCAGCTGAAACGAATAGAAAATAAAATCAATCGGCAAGTTACTTTTTCAAAAAGGAAAGGTGGGTTACTGAAGAAAGCTCGTGAAATTTCTGTACTTTGTGATGCTGAGGTTGCTTTGATCGTCTTCTCCAGCAAAGGAAAGCTCTTTGAATACGCTACAGATTCTAGTATGGAGATGATACTTGAGCGTTATGAGAGATATTCCTGTGCAGAAAGGCAGCTTAATGCAACTCAATCTGAGTCACAGGGTAACTGGATTGTTGAGTATGCAAGGCTAAAAGCTAAGATTGAACTCTTAAAGAGAAAATACAGCAACTATCTGGGAGAAGATTTGAATTCATTGAGTCTCAAAGAACTTCAAAGTCTGGAGCAACAGCTTGAAACTGCTCTTAAACATATTCGAACTAGAAAAGTATGGTTTATATGA 444 38.51 MGRGRVQLKRIENKINRQVTFSKRKGGLLKKAREISVLCDAEVALIVFSSKGKLFEYATDSSMEMILERYERYSCAERQLNATQSESQGNWIVEYARLKAKIELLKRKYSNYLGEDLNSLSLKELQSLEQQLETALKHIRTRKVWFI 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23754926 23757415 - Bpe010123.1 Bpe02g02307 100456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02307 147 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 143 - -
Bpe02g02307 147 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe02g02307 147 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe02g02307 147 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe02g02307 147 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
Bpe02g02307 147 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bpe02g02307 147 Coils Coil 122 142 - -
Bpe02g02307 147 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe02g02307 147 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe02g02307 147 ProSiteProfiles K-box domain profile. 88 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g02307 147 Pfam K-box region 84 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g02307 147 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe02g02307 147 Coils Coil 95 115 - -
Bpe02g02307 147 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bpe02g02307 147 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bpe02g02307 147 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02307 Bpe-Chr2:23754926 Bpe11g01669 Bpe-Chr11:12879739 4.21E-69 dispersed
Bpe06g00030 Bpe-Chr6:367437 Bpe02g02307 Bpe-Chr2:23754926 9.42E-35 dispersed
Bpe13g01368 Bpe-Chr13:18936151 Bpe02g02307 Bpe-Chr2:23754926 2.94E-93 transposed
Bpe14g00307 Bpe-Chr14:3060186 Bpe02g02307 Bpe-Chr2:23754926 3.69E-38 transposed
Bpe10g00914 Bpe-Chr10:14781063 Bpe02g02307 Bpe-Chr2:23754926 2.14E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21054 PF01486 K-box 1.60E-18 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02307 K09264 - qsu:112022353 217.238