Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02319 ATGGGGGACGATGAAGAACCTCCACTCGCCGTTCCAATCGACGTAAGAGCGTCCTTTCCCAAACGACCCATCGAAGGCAACGTCTCGACTGGGGTTACTGTCATTACCGGGTATCTCGGAGCCGGAAAATCCACTTTGGTTAATCATGTATTGAACTCGCAACACGGAAAGAGGATTGCTGTGATACTGAACGAGTTTGGTGAGGAAATCGGAGTGGAAAGGGCTATGATCAACGAAGGAGATGGCGGGAATTTAGTTGAAGAATGGGTTGAGCTTGCGAATGGGTGTGTTTGTTGCACTGTTAAACATAGTCTAGTTCAAGCGATGGAGCAGCTTGTGCAGAGGAAAGAAAGGATCGATCATATATTGCTGGAGACCACTGGACTAGCGAATCCTGCTCCCCTTGCTTCAATTCTTTGGCTTGATGATCAGCTTGAAGCAGAAGTAAAACTTGATTCAATTATCACAGTTGTAGATGCCAAAAACCTTGGTTTTCAGCTCAGTGAGCATCATAGATCATCTTCATTTCCTGAAGTGATTCATCAAATAGCATTTGCGGACACTATTATTCTGAACAAGGTTGATTTGGTTTCTCCAGAGGATCTGCAAAACCTCGAGAAGGAAATTTGTAATATCAATTCACTTGCCAAAGTCATTCATTCAGTTCGTTGTCAAGTTGACTTATCTCGGATTTTAAATTGTCAATCTTATGACGGCGCACATGCGTCTCATTTAGAAGCATTACTGGAAGCAAATAATTCGCTATCTACCAGTGATCTTCATTACCCTGGTGTTCGAACCTTATGTATATGTGACCCCAAGCCAATGGACATTGACAAGGTTCGACTTTGGATTGAGGAGATACTTTGGGACAAAAAGAGTGGTATGAATGTGTATCGTTGTAAAGGAGTTTTGATCTTGGGAAATTCAGATCGACTGCATACACTGCAGGCCGTGAGGGAGTTATACGATATCACTGCGGCTCGTAAATGGGACAGTGAGGAAAGCAGGATGAACAAGATAGTGTTTATAGGTTTGTCTTCTCTAAACTCTCGTTGA 1059 43.15 MGDDEEPPLAVPIDVRASFPKRPIEGNVSTGVTVITGYLGAGKSTLVNHVLNSQHGKRIAVILNEFGEEIGVERAMINEGDGGNLVEEWVELANGCVCCTVKHSLVQAMEQLVQRKERIDHILLETTGLANPAPLASILWLDDQLEAEVKLDSIITVVDAKNLGFQLSEHHRSSSFPEVIHQIAFADTIILNKVDLVSPEDLQNLEKEICNINSLAKVIHSVRCQVDLSRILNCQSYDGAHASHLEALLEANNSLSTSDLHYPGVRTLCICDPKPMDIDKVRLWIEEILWDKKSGMNVYRCKGVLILGNSDRLHTLQAVRELYDITAARKWDSEESRMNKIVFIGLSSLNSR 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23836113 23839048 - Bpe010135.1 Bpe02g02319 100468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02319 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 242 IPR027417 -
Bpe02g02319 352 Pfam Cobalamin synthesis protein cobW C-terminal domain 266 346 IPR011629 -
Bpe02g02319 352 PANTHER COBW DOMAIN-CONTAINING PROTEIN 1-RELATED 27 346 - -
Bpe02g02319 352 PANTHER COBW-RELATED 27 346 - -
Bpe02g02319 352 Gene3D - 246 351 IPR036627 -
Bpe02g02319 352 Gene3D - 29 238 IPR027417 -
Bpe02g02319 352 CDD CobW-like 32 233 - -
Bpe02g02319 352 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 265 346 - -
Bpe02g02319 352 Pfam CobW/HypB/UreG, nucleotide-binding domain 32 219 IPR003495 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02319 - - - jre:109014360 522.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02319 Bpe13g01380 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02319 Bpe-Chr2:23836113 Bpe03g00587 Bpe-Chr3:26124025 6.99E-66 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g65 . Blo16g01091 . Bda11g01182 Bpe13g01380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01182 . Bpe02g02319 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008535 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 35