Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02324 ATGACCCTGTATATGCCCTTGTTCAGGTGCAGTACCACCTTGAGAACTCTAACCCAACTCCATGCTCACCTCTTCGTCACCGGTCTTCAGGCCGACCCGCTCGCCTCCACCAAGCTCATCGAATCGTACGCCGAAGTGGGCAGCCTTCCTTCTTCCAGACTCGTTTTCGAAACCTTCCGAAATCCTGATTCTTTCATGTGGGGTGTGCTCGTCAAGTCTTACGTATGGAACCAGCGTTTTGAAGAAGCTGTTTCACTTTTTCATAAAATGGTGTACCAGGAAATTCGGTTCAATGAGTTTGTTTTCCCTTCCATTTTGAGGGCTTGTTCTGGGTTCGGCGATATGACGATTGGCGAGAAAGTGCATGGGAGGATTGTTAAGTGCGGGTATGATGGCGATGCTGTGGTGGAAACCTCGTTGCTCAGTATGTATGGAGAGGCAGGTTGTTTGGATGGTGCGCGGAAGGTGTTCGATGAAATGCCGGTTAGAGATTTGGTTTCATGGAGTTCTATTATTAAGTGTGATGTCGAGAATGGGGAAGCTTTGGAAGGCTTGGATATCTTCCGGTGGATGGTCTCCGAAGGAGTTGAGGCAGATGCAGTGACAATGCTTAGTGTTGTCGAAGTTTGTGGGGAGATGAGGAGTTTGAGTTTGGCAAAGTCAGTTCATGGCTATGTTATCAGAAAGGAAATTCAAGATGATGGTTCTTTGAATAGTTCTCTGATTGTAATGTACACAAAATGTGATGATTTGCGAAGTTCGGAGTTGACCTTTGCGAAGATTTCACAGCCTGATACTTCTTCCTGGACTGCCATGATCTCCAGCTATAATCAAGCTGGTTTTTTTCATGAAGCCCTAAGGGTTTTCGCTGACATGCGAAAATCTGAAGTTGAGGTAAATTCAGTCACCCTTTTTGCAGTCTTGAGTTCTTGTTCTAGGTTAGGTTTGTTCAAGCAAGGCAGATCAGTTCATTCCTTCATTATAAGAAACGCTATAGACCCTCCTCTCGATTTTATAGGACCTGCTCTAATCGAACTATACGCAAACTCTTTGAAATTAAGTGTTTGTAATAGAATTCTTCATGTGATTGGAGATAGAAGTATTTTACCATGGAATATGCTCATTTCAGCTTATGCTCAAAATCAATTGTTGGAGGAAGCATTGCTTGTGTTTGTGAAGTTGTACGCCAAAGGACTTCGGCCTGATTCGTTCAGCTTGGCGAGTTCCATTTCTGCTTCTGGCGATCTGGATCTATTTCATTTTGGACAGCAGATTCATAGTCATACTATCAAGAGCGGTTATTTCTCGAACGATTATGTTCGTAATTCACTCATCGACATGTACTCCAATTGCAGGTTTGTGGATTTAGCGTACAAAATATTCAACGAAATCAAGTGGAGAAGTGTTGTTACTTGGAATTCTATGATGTGTGGATTTTCTCAGAATGGTAACTCTATTGAAGCAATCAAATTATTAGATGAAATGTATTCAAACCGTCAAGAAATGGGAGAAATTACCTTCTTAAGTGCAATCAAAGCTTGCTCCCTTTTGGGGCATCTAGAAAAAGGAAAGTGGATTCACCACAAGCTAATCACTCTCGGTTTGATCAAACATCAGTACATCGAAACAGGTCTGATCGACATGTATGGAAAGTGTGGAGACCTCGACACATCTAAACGAGTTTTCGACCACATGTTGGAAAAGTCTCTGGTCTCTTGGAGCACCATGATAGCTTCCTATGGGGCCCACGGTCGGATTAATACTGTCATCGAACTCTACAATCAGATGCTTGATTCGGGTATAAAGCCGAATGAAGTTACCTTCATGAACATTCTTTCGGCATGTAGCCATGCAGGATTGGTAAAAGAAGGGAAGTTCTATTTCAGCTCCATGACAGAATATGGGATTGAGCAGAAAACAGAGCATTTTTCTTGCATGGTCGATATTCTGAGCCGTGCAGGCGAACTTGACGAAGCCTACAAAATTATCAAGTCGATGCCGTTTTCCGTCGATTCGAGCATTTGGGGGGCTCTGCTTAACGGGTGTCGAATCCACATGGAGCTTGATATGGTAAAGACAATTCAAAGGGATCTCCTTAATCTTAGGACAGATGATACTGGATACTACACATTGCTGTCAAATGTATATGCAGAAGAAGGGGAATGGAATGAGTTTCACAGGGTGAGGAGAACAATGAAATCTACAGGTTTGAAAAAGGTACCTGCTTTTAGTTCAATTGAGATTGATAGGAGAGTTCATAGATTTGGAGCTGGAGATACTTTTCATTTAGAAAGCAATGAAATCTTTAGGCTGTTGGATAATTTTCAGAGTTTGGCCATGGATGATGGGAATTGTGTGCATTATTTGAATTCAGCAAGTGATATAAGTATCTATTCAGAATATGGTTTAGTCTCCTATTCTTGCATCTATCTTAAACCTTAA 2442 42.06 MTLYMPLFRCSTTLRTLTQLHAHLFVTGLQADPLASTKLIESYAEVGSLPSSRLVFETFRNPDSFMWGVLVKSYVWNQRFEEAVSLFHKMVYQEIRFNEFVFPSILRACSGFGDMTIGEKVHGRIVKCGYDGDAVVETSLLSMYGEAGCLDGARKVFDEMPVRDLVSWSSIIKCDVENGEALEGLDIFRWMVSEGVEADAVTMLSVVEVCGEMRSLSLAKSVHGYVIRKEIQDDGSLNSSLIVMYTKCDDLRSSELTFAKISQPDTSSWTAMISSYNQAGFFHEALRVFADMRKSEVEVNSVTLFAVLSSCSRLGLFKQGRSVHSFIIRNAIDPPLDFIGPALIELYANSLKLSVCNRILHVIGDRSILPWNMLISAYAQNQLLEEALLVFVKLYAKGLRPDSFSLASSISASGDLDLFHFGQQIHSHTIKSGYFSNDYVRNSLIDMYSNCRFVDLAYKIFNEIKWRSVVTWNSMMCGFSQNGNSIEAIKLLDEMYSNRQEMGEITFLSAIKACSLLGHLEKGKWIHHKLITLGLIKHQYIETGLIDMYGKCGDLDTSKRVFDHMLEKSLVSWSTMIASYGAHGRINTVIELYNQMLDSGIKPNEVTFMNILSACSHAGLVKEGKFYFSSMTEYGIEQKTEHFSCMVDILSRAGELDEAYKIIKSMPFSVDSSIWGALLNGCRIHMELDMVKTIQRDLLNLRTDDTGYYTLLSNVYAEEGEWNEFHRVRRTMKSTGLKKVPAFSSIEIDRRVHRFGAGDTFHLESNEIFRLLDNFQSLAMDDGNCVHYLNSASDISIYSEYGLVSYSCIYLKP 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23865092 23867533 + Bpe010139.1 Bpe02g02324 100473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02324 813 Pfam PPR repeat 371 398 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat 138 163 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat 642 666 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat 65 91 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat 442 467 IPR002885 -
Bpe02g02324 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 396 774 - -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 219 337 IPR011990 GO:0005515
Bpe02g02324 813 Pfam PPR repeat family 264 311 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat family 468 514 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat family 569 616 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Bpe02g02324 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 272 - -
Bpe02g02324 813 Pfam E motif 688 747 IPR046848 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 571 605 IPR002885 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 470 498 IPR002885 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 138 165 IPR002885 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 371 403 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 117 218 IPR011990 GO:0005515
Bpe02g02324 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 258 401 - -
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 543 746 IPR011990 GO:0005515
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 342 542 IPR011990 GO:0005515
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 7 116 IPR011990 GO:0005515
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Bpe02g02324 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 272 - -
Bpe02g02324 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 258 401 - -
Bpe02g02324 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 396 774 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02324 - - - qsu:112012233 1042.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02324 Bpe-Chr2:23865092 Bpe08g00298 Bpe-Chr8:1790897 5.52E-12 dispersed
Bpe10g00067 Bpe-Chr10:936208 Bpe02g02324 Bpe-Chr2:23865092 1.83E-125 dispersed
Bpe02g02324 Bpe-Chr2:23865092 Bpe08g00390 Bpe-Chr8:2396749 1.07E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g77 Blo01g00445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0918 . . . . . . . . . . . Bpe02g02324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012959 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 1 1 0 1 0 1 0 1 1 1 26