Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02324 ATGACCCTGTATATGCCCTTGTTCAGGTGCAGTACCACCTTGAGAACTCTAACCCAACTCCATGCTCACCTCTTCGTCACCGGTCTTCAGGCCGACCCGCTCGCCTCCACCAAGCTCATCGAATCGTACGCCGAAGTGGGCAGCCTTCCTTCTTCCAGACTCGTTTTCGAAACCTTCCGAAATCCTGATTCTTTCATGTGGGGTGTGCTCGTCAAGTCTTACGTATGGAACCAGCGTTTTGAAGAAGCTGTTTCACTTTTTCATAAAATGGTGTACCAGGAAATTCGGTTCAATGAGTTTGTTTTCCCTTCCATTTTGAGGGCTTGTTCTGGGTTCGGCGATATGACGATTGGCGAGAAAGTGCATGGGAGGATTGTTAAGTGCGGGTATGATGGCGATGCTGTGGTGGAAACCTCGTTGCTCAGTATGTATGGAGAGGCAGGTTGTTTGGATGGTGCGCGGAAGGTGTTCGATGAAATGCCGGTTAGAGATTTGGTTTCATGGAGTTCTATTATTAAGTGTGATGTCGAGAATGGGGAAGCTTTGGAAGGCTTGGATATCTTCCGGTGGATGGTCTCCGAAGGAGTTGAGGCAGATGCAGTGACAATGCTTAGTGTTGTCGAAGTTTGTGGGGAGATGAGGAGTTTGAGTTTGGCAAAGTCAGTTCATGGCTATGTTATCAGAAAGGAAATTCAAGATGATGGTTCTTTGAATAGTTCTCTGATTGTAATGTACACAAAATGTGATGATTTGCGAAGTTCGGAGTTGACCTTTGCGAAGATTTCACAGCCTGATACTTCTTCCTGGACTGCCATGATCTCCAGCTATAATCAAGCTGGTTTTTTTCATGAAGCCCTAAGGGTTTTCGCTGACATGCGAAAATCTGAAGTTGAGGTAAATTCAGTCACCCTTTTTGCAGTCTTGAGTTCTTGTTCTAGGTTAGGTTTGTTCAAGCAAGGCAGATCAGTTCATTCCTTCATTATAAGAAACGCTATAGACCCTCCTCTCGATTTTATAGGACCTGCTCTAATCGAACTATACGCAAACTCTTTGAAATTAAGTGTTTGTAATAGAATTCTTCATGTGATTGGAGATAGAAGTATTTTACCATGGAATATGCTCATTTCAGCTTATGCTCAAAATCAATTGTTGGAGGAAGCATTGCTTGTGTTTGTGAAGTTGTACGCCAAAGGACTTCGGCCTGATTCGTTCAGCTTGGCGAGTTCCATTTCTGCTTCTGGCGATCTGGATCTATTTCATTTTGGACAGCAGATTCATAGTCATACTATCAAGAGCGGTTATTTCTCGAACGATTATGTTCGTAATTCACTCATCGACATGTACTCCAATTGCAGGTTTGTGGATTTAGCGTACAAAATATTCAACGAAATCAAGTGGAGAAGTGTTGTTACTTGGAATTCTATGATGTGTGGATTTTCTCAGAATGGTAACTCTATTGAAGCAATCAAATTATTAGATGAAATGTATTCAAACCGTCAAGAAATGGGAGAAATTACCTTCTTAAGTGCAATCAAAGCTTGCTCCCTTTTGGGGCATCTAGAAAAAGGAAAGTGGATTCACCACAAGCTAATCACTCTCGGTTTGATCAAACATCAGTACATCGAAACAGGTCTGATCGACATGTATGGAAAGTGTGGAGACCTCGACACATCTAAACGAGTTTTCGACCACATGTTGGAAAAGTCTCTGGTCTCTTGGAGCACCATGATAGCTTCCTATGGGGCCCACGGTCGGATTAATACTGTCATCGAACTCTACAATCAGATGCTTGATTCGGGTATAAAGCCGAATGAAGTTACCTTCATGAACATTCTTTCGGCATGTAGCCATGCAGGATTGGTAAAAGAAGGGAAGTTCTATTTCAGCTCCATGACAGAATATGGGATTGAGCAGAAAACAGAGCATTTTTCTTGCATGGTCGATATTCTGAGCCGTGCAGGCGAACTTGACGAAGCCTACAAAATTATCAAGTCGATGCCGTTTTCCGTCGATTCGAGCATTTGGGGGGCTCTGCTTAACGGGTGTCGAATCCACATGGAGCTTGATATGGTAAAGACAATTCAAAGGGATCTCCTTAATCTTAGGACAGATGATACTGGATACTACACATTGCTGTCAAATGTATATGCAGAAGAAGGGGAATGGAATGAGTTTCACAGGGTGAGGAGAACAATGAAATCTACAGGTTTGAAAAAGGTACCTGCTTTTAGTTCAATTGAGATTGATAGGAGAGTTCATAGATTTGGAGCTGGAGATACTTTTCATTTAGAAAGCAATGAAATCTTTAGGCTGTTGGATAATTTTCAGAGTTTGGCCATGGATGATGGGAATTGTGTGCATTATTTGAATTCAGCAAGTGATATAAGTATCTATTCAGAATATGGTTTAGTCTCCTATTCTTGCATCTATCTTAAACCTTAA 2442 42.06 MTLYMPLFRCSTTLRTLTQLHAHLFVTGLQADPLASTKLIESYAEVGSLPSSRLVFETFRNPDSFMWGVLVKSYVWNQRFEEAVSLFHKMVYQEIRFNEFVFPSILRACSGFGDMTIGEKVHGRIVKCGYDGDAVVETSLLSMYGEAGCLDGARKVFDEMPVRDLVSWSSIIKCDVENGEALEGLDIFRWMVSEGVEADAVTMLSVVEVCGEMRSLSLAKSVHGYVIRKEIQDDGSLNSSLIVMYTKCDDLRSSELTFAKISQPDTSSWTAMISSYNQAGFFHEALRVFADMRKSEVEVNSVTLFAVLSSCSRLGLFKQGRSVHSFIIRNAIDPPLDFIGPALIELYANSLKLSVCNRILHVIGDRSILPWNMLISAYAQNQLLEEALLVFVKLYAKGLRPDSFSLASSISASGDLDLFHFGQQIHSHTIKSGYFSNDYVRNSLIDMYSNCRFVDLAYKIFNEIKWRSVVTWNSMMCGFSQNGNSIEAIKLLDEMYSNRQEMGEITFLSAIKACSLLGHLEKGKWIHHKLITLGLIKHQYIETGLIDMYGKCGDLDTSKRVFDHMLEKSLVSWSTMIASYGAHGRINTVIELYNQMLDSGIKPNEVTFMNILSACSHAGLVKEGKFYFSSMTEYGIEQKTEHFSCMVDILSRAGELDEAYKIIKSMPFSVDSSIWGALLNGCRIHMELDMVKTIQRDLLNLRTDDTGYYTLLSNVYAEEGEWNEFHRVRRTMKSTGLKKVPAFSSIEIDRRVHRFGAGDTFHLESNEIFRLLDNFQSLAMDDGNCVHYLNSASDISIYSEYGLVSYSCIYLKP 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23865092 23867533 + Bpe010139.1 Bpe02g02324 100473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02324 813 Pfam PPR repeat 371 398 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat 138 163 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat 642 666 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat 65 91 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat 442 467 IPR002885 -
Bpe02g02324 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 396 774 - -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 219 337 IPR011990 GO:0005515
Bpe02g02324 813 Pfam PPR repeat family 264 311 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat family 468 514 IPR002885 -
Bpe02g02324 813 Pfam PPR repeat family 569 616 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Bpe02g02324 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 272 - -
Bpe02g02324 813 Pfam E motif 688 747 IPR046848 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 571 605 IPR002885 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 470 498 IPR002885 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 138 165 IPR002885 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Bpe02g02324 813 TIGRFAM PPR: pentatricopeptide repeat domain 371 403 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 117 218 IPR011990 GO:0005515
Bpe02g02324 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 258 401 - -
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 543 746 IPR011990 GO:0005515
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 342 542 IPR011990 GO:0005515
Bpe02g02324 813 Gene3D Tetratricopeptide repeat domain 7 116 IPR011990 GO:0005515
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Bpe02g02324 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Bpe02g02324 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 272 - -
Bpe02g02324 813 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 258 401 - -
Bpe02g02324 813 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 396 774 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02324 Bpe-Chr2:23865092 Bpe08g00298 Bpe-Chr8:1790897 5.52E-12 dispersed
Bpe10g00067 Bpe-Chr10:936208 Bpe02g02324 Bpe-Chr2:23865092 1.83E-125 dispersed
Bpe02g02324 Bpe-Chr2:23865092 Bpe08g00390 Bpe-Chr8:2396749 1.07E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02324 - - qsu:112012233 1042.34