Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02329 ATGATGAGACTGTTGGAAGCGATTAAGGTCGTTGTTGCTATAGGCTTTCTTTTTTATGAATCGGAATCAATCCAGTTCGAGTTACAGTCGGGCAATACCAAGTGCGTCGCTGAGGACTTGAAGATCAATTCCATGACAGTAGGGAAGTACAGCGTTATTAATCCAAACGACGGCCAACCGCTGCCGAATTCACACAAAATCGTCGTCCGGGTAACTTCATCTTCCGGGACTAGTTTTCATCAATCGGACCCCGTGAAGTCCGGGCAGTTCGGATTTGTGGCGTCGGAGGGAGGCGATTACATGACGTGCTTGTGGGCTCCTCCTCATGATCCTGTAGCTACATTGACTGTGGATTTTGAGTGGAAAAGTGGAGTGGCTGCCAAGGGCTGGACAAATGTTGCTAAGAAAGGAACTGTTGAAAGCTTGGAGTATGAGCTGAAGATGCTTTATGACAATGCTATGTCCATTCAAGAGGAGATGTTATATCTTAGAAAAAGGGAAGAAGAGATGCAAGAGCTGAACAGAGCAACCAACACTAAAATGGCATGGCTGTGTTTTCTCTCCCTTTTTGTTTGCTTATCGGTGGCAGGATTGCAGCTATGGAATTTGAAGTTCTTTTTTGAGAAAAAGAAGATCATTTAA 642 44.7 MMRLLEAIKVVVAIGFLFYESESIQFELQSGNTKCVAEDLKINSMTVGKYSVINPNDGQPLPNSHKIVVRVTSSSGTSFHQSDPVKSGQFGFVASEGGDYMTCLWAPPHDPVATLTVDFEWKSGVAAKGWTNVAKKGTVESLEYELKMLYDNAMSIQEEMLYLRKREEEMQELNRATNTKMAWLCFLSLFVCLSVAGLQLWNLKFFFEKKKII 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23897801 23899260 - Bpe010145.1 Bpe02g02329 100478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02329 213 Coils Coil 139 176 - -
Bpe02g02329 213 Pfam emp24/gp25L/p24 family/GOLD 24 208 IPR009038 -
Bpe02g02329 213 SMART EMP24_GP25L_2 23 208 IPR009038 -
Bpe02g02329 213 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 9 213 IPR015720 -
Bpe02g02329 213 ProSiteProfiles GOLD domain profile. 33 148 IPR009038 -
Bpe02g02329 213 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN P24DELTA7 9 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02329 K20352 TMED10, ERV25; p24 family protein delta-1 - csv:101204616 304.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02329 Bpe-Chr2:23897801 Bpe11g01449 Bpe-Chr11:10740414 6.34E-88 dispersed
Bpe13g01400 Bpe-Chr13:19230426 Bpe02g02329 Bpe-Chr2:23897801 1.11E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g959 . . . Bda11g01202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01202 . Bpe02g02329 . Bma06g00708 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007538 1 1 2 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 2 1 1 36