Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02353 ATGTCAAGCAATTGGATGGCTTTCTTCCCTGCAAATTTCATCCCACAAGTTCCCCAGGAAGATGAACATCAGGCTCCCTCTACCCTGAACTCGATTCTTCCCCCGTGTACTCCTCAGGACTTTCATGGAGTGGCGTCGTTTTTAGGGAAGAGATCCATGTCGTTTTCTGGAATTGAAATGGGTGAAGAAGCAAACAATGGGGAGGATGATTTGTCGGACGATGGATCGCAAGCAGGAGAGAAGAAGAGGAGGCTAAACATGGAGCAGGTGAAGACTCTGGAGAAGAACTTCGAGCTGGGAAATAAGCTGGAGCCCGAGAGAAAAATGCAGTTGGCTCGAGCTCTTAATCTGCAGCCTCGACAGATTGCAATTTGGTTTCAGAACAGAAGAGCTAGGTGGAAGACGAAGCAGTTGGAGAAAGATTTCGATCTTCTCAAACGACAGTTCGAAGCCATTAAAGCTGATAACGAAGTGCTACAGAGCCAGAATCAAAAGCTTCAGGCTGAGATATTGGCTCTGAAAAGTAGAGAGCCTACAGAATCGATCAATCTGAACAAAGAAACAGAAGGATCAAGCAGCAACCGGAGCGAGAACAGCTCCGATGTAAAACTGGATATTTCTAGAACACCAGCCATCGATAGCCCTTTATCCACCCATCCAACGAGCAGGCCTTTGTTTCCAGCCGCCATTAGAGCGCCTGGCGTAGCTCAGCTCTTTCAGAACCCATCGAGATCTGAGCTCCATTGCCATAAGATCGATCAGATGGGGAAAGAAGAAAGCCTCAGCAACATGTTTTGCGGGATCGATGATCAATCCGGCGGGCTGTGGCCGTGGTTGGAGAATCAAAATTTTAATTGA 858 47.55 MSSNWMAFFPANFIPQVPQEDEHQAPSTLNSILPPCTPQDFHGVASFLGKRSMSFSGIEMGEEANNGEDDLSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWKTKQLEKDFDLLKRQFEAIKADNEVLQSQNQKLQAEILALKSREPTESINLNKETEGSSSNRSENSSDVKLDISRTPAIDSPLSTHPTSRPLFPAAIRAPGVAQLFQNPSRSELHCHKIDQMGKEESLSNMFCGIDDQSGGLWPWLENQNFN 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24009360 24010628 + Bpe010171.1 Bpe02g02353 100502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02353 285 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Bpe02g02353 285 Gene3D - 73 142 - -
Bpe02g02353 285 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Bpe02g02353 285 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Bpe02g02353 285 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Bpe02g02353 285 SMART HOX_1 79 140 IPR001356 GO:0003677
Bpe02g02353 285 MobiDBLite consensus disorder prediction 61 84 - -
Bpe02g02353 285 MobiDBLite consensus disorder prediction 184 220 - -
Bpe02g02353 285 MobiDBLite consensus disorder prediction 181 220 - -
Bpe02g02353 285 CDD homeodomain 81 137 IPR001356 GO:0003677
Bpe02g02353 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 285 - -
Bpe02g02353 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 285 IPR045224 GO:0003700
Bpe02g02353 285 Coils Coil 135 176 - -
Bpe02g02353 285 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g02353 Bpe13g01422 CCT
Bpe02g02353 Bpe13g01422 ECH
Bpe02g02353 Bpe11g01633 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02353 Bpe-Chr2:24009360 Bpe13g00171 Bpe-Chr13:9511606 2.31E-38 dispersed
Bpe11g01633 Bpe-Chr11:12447351 Bpe02g02353 Bpe-Chr2:24009360 1.83E-130 wgd
Bpe13g01422 Bpe-Chr13:19482171 Bpe02g02353 Bpe-Chr2:24009360 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21060 PF00046 Homeodomain 7.00E-15 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02353 K09338 - jre:109019228 471.855