Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02356 ATGTCGACTCCTTCCAGAAAGAGACTGATGAGAGATTTCAAGAGGTTACAACAAGATCCTCCTGCTGGAATTAGTGGTGCTCCTCAAGACAATAATATCATGCTTTGGAACGCTGTGATATTTGGACCTGATGACACACCTTGGGATGGAGGTACGTTCAAGTTAACACTTCAATTTACAGAGGATTATCCAAACAAACCCCCAACTGTGCGCTTTGTTTCTCGGATGTTTCACCCAAATATTTACGCCGATGGAAGCATTTGCTTGGACATTCTGCAAAATCAGTGGAGTCCGATATATGATGTTGCTGCTATTCTCACCTCGATACAGTCACTGCTCTGTGATCCAAACCCCAACTCACCTGCAAATTCTGAAGCTGCTCGGACGTTCAGCCAGAACAAACGTGAGTATAACAGAAGAGTACGAGAGATTGTTGAGCAGAGTTGGACCGCTGATTAA 459 44.23 MSTPSRKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARTFSQNKREYNRRVREIVEQSWTAD 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24028699 24030250 - Bpe010174.1 Bpe02g02356 100505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02356 152 SMART ubc_7 7 150 - -
Bpe02g02356 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Bpe02g02356 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
Bpe02g02356 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Bpe02g02356 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Bpe02g02356 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Bpe02g02356 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Bpe02g02356 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Bpe02g02356 152 CDD UBCc 7 145 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02356 K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] - jre:108989809 316.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02356 Bpe13g01427 CCT
Bpe02g02356 Bpe13g01427 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01944 Bpe-Chr2:21395909 Bpe02g02356 Bpe-Chr2:24028699 2.49E-113 dispersed
Bpe02g02356 Bpe-Chr2:24028699 Bpe02g01666 Bpe-Chr2:19342722 2.98E-44 dispersed
Bpe15g00327 Bpe-Chr15:14787304 Bpe02g02356 Bpe-Chr2:24028699 1.46E-36 transposed
Bpe13g01427 Bpe-Chr13:19563870 Bpe02g02356 Bpe-Chr2:24028699 3.75E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g859 Blo01g00419 . Bda01g02170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0976 Cone19ag0968 . . . . . . . . . . . Bpe02g02356 Bma01g00085 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71