Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00006 ATGTCCGCATTTACTTCCATCTTCCTGGTTCTTCTTCTCTGCAACTCATATACTCTTGTGGGTTCTTTGAACGATGAAGGCTACGTGCTTTTATCATTCAAACAGTCCATTGTAGAAGACCCTTCTGCGTCGTTGAAAAACTGGAACTCTTCTGATAGGATCCCATGTTTATGGACTGGGATTACATGCAAGGAAGAAAGAGTTGTTTCTCTGAGTTTTCCTAAAACTGAACTCAAAGGGTTTCTTCTTTCTTCTCTTGGACTTTTGTCAATGCTTCGTCATCTAAATTTAAGGAACAATAACTTTTACGGAAGTTTGCCTGTTGAGCTGTTTCAAGCTCAGGGACTGCAAAGTTTAGTCCTTTATGGGAATCACTTTTCTGGGTCTGTACCCCATGAGATTGGGAAGCTCATCAATCTTCAAATCTTAGATTTATCTCAAAATTTCTTCAATGGGTCATTACCCATTTCAATACATCAATGCAGAAGGCTCAAAACTCTTGATGTTAGCAAGAATAATTTCTCTGGTTGTCTGCCTATCGGTCTCAGCTCTAGTTTAATTTCTCTGGAAAAGCTTGATCTTTCGTTTAACAAGTTAAATGGTTCAATTCCTGATGATATGGGAAATTTTTGTAACCTGAAAGGGACTGTTGATTTTTCACACAATCTTTTTTCGGGTAAGATTCCTGCCAGTCTCGGAAATCTACCCGAGAAGGTTTATATTGACCTTTCTTACAATAATTTGAGTGGTTCAATACCTCAAAATGGTCCTTTGATAAATAGAGGACCTACCGCCTTTATTGGAAACCCGGAACTCTGTGGCCCTCCGTTGAAGAACTTGTGTTCTTCGAAAGATACCAGTTGGAGTTCACCTTCTTCGTTTCCATTTCTCCCAGATAGCTACAATCCGCCCGGAGATTCAAATTATGATTCCACAGAGAGACACAAAACAAGAGGTTTAAGTAAGAGCGCAGTGATTGCTGTTGTAGTAGGTAATATCATTGGCATATGCTTAATTGGGTTGTTGATTTCTTATTGTTATTCAAGAATGTGTATGAATAATAATTGTCAAGACGGAAGGAATTATGGTTTTGAGAGGGAAGTGAAGGCGGGAAAGGCTTCTTTGTGTTTTCGGAAGGATGAATTAGAAACTCCTTCGGACAACCCAGAGCAGCATGATCTCATGCCTTTGGATAAACATGTGTCATTTGATCTAGATGAACTTCTCAAGGCATCAGCTTTTGTTATTGGAAAAAGCGGGATTGGAATAATGTACAAAGTTGTTCTCGAAGGCGGACTCAACTTGGCTGTGAGAAGGTTAGGTGAAGGAGGCTCTCAGAGGTTCAAAGAATTTCAGACAGAAGTAGAAGCAATTGGGAAGTTAAGGCATCCAAATATTGTAAGTCTTAGAGCCTATTATTGGTCTGTTGATGAGAAACTTCTCATTTATGACTACATGCCCAATGGAAATCTTGCCAATGCAATTCATGTTGAGCCTGGATCGCCTTTATTCAAGCCATTGCCATGGTCGTCTCGATTGAAAATCATGAGAGGAGCTGCAAAGGGACTGGTTTATCTTCATGAATTTAGCCCCAAAAAATATGTTCACGGTGATTTGAAGCCTAAAAACATACTTCTTGGTCCAAATATGGATGCTCATATCTCAGATTTTGGACTGGGTCGACTTGCTAATATCGCCGGCGGGTTGCCAACTATGCAATCTAGTCGTGTATCTTCAGACAAACAGCTGGAGAGACAGCTAAAGTCCTCAGAAGCTAACACATTCATTTCATCCCCTAAAATGGGATCTTATTATCAAGCCCCGGAAGTACTAAAAGTGGTGAAACCATCACAGAAGTGGGATGTCTACTCATTTGGCGTGATAATGCTGTTAATGATTACTGGTAAATTGACCATAACACAGAAAGACACTTCAGAAATGGATCTAGTTCAATGGATTCAACGCTGCTTTGAAGAAAAACAACAATTTTCTTATGTTTTAGATCCTCAATTAGCTCAAGAAATTGGTGCAGAAGAGGAGATACTGGCTGTTTTGAAGATTGCAATGGCTTGTGCTCACGGAAGTCCCGAAAGAAGACCAACAATGCGACAAGTAACCGATGCTTTAGAAAGATTGAATGTTTCTGCAGAATGA 2154 39.83 MSAFTSIFLVLLLCNSYTLVGSLNDEGYVLLSFKQSIVEDPSASLKNWNSSDRIPCLWTGITCKEERVVSLSFPKTELKGFLLSSLGLLSMLRHLNLRNNNFYGSLPVELFQAQGLQSLVLYGNHFSGSVPHEIGKLINLQILDLSQNFFNGSLPISIHQCRRLKTLDVSKNNFSGCLPIGLSSSLISLEKLDLSFNKLNGSIPDDMGNFCNLKGTVDFSHNLFSGKIPASLGNLPEKVYIDLSYNNLSGSIPQNGPLINRGPTAFIGNPELCGPPLKNLCSSKDTSWSSPSSFPFLPDSYNPPGDSNYDSTERHKTRGLSKSAVIAVVVGNIIGICLIGLLISYCYSRMCMNNNCQDGRNYGFEREVKAGKASLCFRKDELETPSDNPEQHDLMPLDKHVSFDLDELLKASAFVIGKSGIGIMYKVVLEGGLNLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVSLRAYYWSVDEKLLIYDYMPNGNLANAIHVEPGSPLFKPLPWSSRLKIMRGAAKGLVYLHEFSPKKYVHGDLKPKNILLGPNMDAHISDFGLGRLANIAGGLPTMQSSRVSSDKQLERQLKSSEANTFISSPKMGSYYQAPEVLKVVKPSQKWDVYSFGVIMLLMITGKLTITQKDTSEMDLVQWIQRCFEEKQQFSYVLDPQLAQEIGAEEEILAVLKIAMACAHGSPERRPTMRQVTDALERLNVSAE 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43856 46101 - Bpe011851.1 Bpe03g00006 100511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00006 717 ProSiteProfiles Protein kinase domain profile. 410 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00006 717 MobiDBLite consensus disorder prediction 295 314 - -
Bpe03g00006 717 CDD STKc_IRAK 416 712 - -
Bpe03g00006 717 Gene3D Transferase(Phosphotransferase) domain 1 487 717 - -
Bpe03g00006 717 Gene3D Phosphorylase Kinase; domain 1 416 486 - -
Bpe03g00006 717 SUPERFAMILY Protein kinase-like (PK-like) 415 711 IPR011009 -
Bpe03g00006 717 SMART serkin_6 414 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00006 717 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Bpe03g00006 717 Pfam Protein kinase domain 416 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00006 717 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 11 715 - -
Bpe03g00006 717 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Bpe03g00006 717 Gene3D Ribonuclease Inhibitor 183 283 IPR032675 -
Bpe03g00006 717 PANTHER OS05G0588300 PROTEIN 11 715 - -
Bpe03g00006 717 SUPERFAMILY L domain-like 24 278 - -
Bpe03g00006 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Bpe03g00006 717 Pfam Leucine Rich Repeat 92 112 IPR001611 GO:0005515
Bpe03g00006 717 SMART LRR_typ_2 186 210 IPR003591 -
Bpe03g00006 717 SMART LRR_typ_2 137 161 IPR003591 -
Bpe03g00006 717 SMART LRR_typ_2 89 113 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02022 Bpe-Chr2:21840515 Bpe03g00006 Bpe-Chr3:43856 0 dispersed
Bpe03g00006 Bpe-Chr3:43856 Bpe13g01039 Bpe-Chr13:16062213 0 dispersed
Bpe15g01171 Bpe-Chr15:20580117 Bpe03g00006 Bpe-Chr3:43856 3.13E-41 dispersed
Bpe03g00006 Bpe-Chr3:43856 Bpe03g00008 Bpe-Chr3:80431 4.13E-86 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63216 PF00069 Pkinase 3.60E-30 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00006 - - qlo:115978418 972.615