Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00018 ATGACGAAATCAAAGAATTTCATCAATCATTTCATTAAACCGTTTAAATTGGGTTCTTCAAGAGAGGGCGACACAGAGGAAGACTTGGAGAAGATTGCTGCGCAGGAGCAGAAGCACTTTCCGTTTGATACTTTAGTAGCAGCGACTAGAAATTTTCATCCCAATCAGAAGCTTGGCGAAGGCGGCTTTGGACCTGTTTTTAAAGGAAAGTTGGATGATGGAAGAGAGATTGCAGTGAAAAAGTTGTCTCAAAGCTCAAAGCAAGGGATGAAAGAGTTCAGAAACGAAGCAAAATTGTTGGCAAAAGTTCAACACCGGAATGTTGTGAATTTGTTGGGATATTGCGTGAACGGAGAAGATAAGCTACTCGTTTATGAATACGTCTCTAACGAGAGCCTCGACAAGCTTCTCTTCAGATCTAATCGAAGAGCAGAGCTTTATTGGAATCAAAGATTCGAGATAATCTGTGGCATCGCACGAGGCTTGCTTTACCTTCACGAGGACTCTCCCAATGTTATCATCCATCGTGATATAAAGGCAAGCAATATTTTACTCGATGATAAGTGGGTACCTAAAATTGCCGATTTTGGTATGGCTCGACTCTTCCCTGAAGATCAAACACACATCAACACTCGTGTAGCTGGAACCAATGGGTACATGGCACCCGAATATGTGATGTATGGCCACTTATCGGCGAAGGCAGATGTTTTTAGCTTTGGCGTGTTGGTTCTCGAACTTATAAGTGGACAGAAAAACTCTTCGTTTTCTTCATTTACTGATGGAAGTAATCTACTAGATTGGGCATACAAGCTTTACAAAAACGGTAAAAGCATGGAGATTGTGGACTCCAGGTTGGCTGAATCAGCCTCTCCGGAGCAAGTGGCGATGTGCATTCAGCTCGGACTGCTTTGCGTGCAGAGCAATCTGGAGCTACGTCCCACCATGGGACGTGTGATTGTGATGTTATCAAAAAAGCACGGAAATTTGGACGAACCAACTAGACCAGGCATACCAGGTTCACGATTTAGACAGGCTAGGCGGCATGGTGGAGGGTCCAAAATTTTGACCGACTCCCATTCAAATACGTTGGAATCGAGTTCTACTAATACTGCAACTGCATCGGCATCTGCACGCGCATCTACATCGGCATCTGCACGCGCATCTACATCT 1170 44.27 MTKSKNFINHFIKPFKLGSSREGDTEEDLEKIAAQEQKHFPFDTLVAATRNFHPNQKLGEGGFGPVFKGKLDDGREIAVKKLSQSSKQGMKEFRNEAKLLAKVQHRNVVNLLGYCVNGEDKLLVYEYVSNESLDKLLFRSNRRAELYWNQRFEIICGIARGLLYLHEDSPNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHINTRVAGTNGYMAPEYVMYGHLSAKADVFSFGVLVLELISGQKNSSFSSFTDGSNLLDWAYKLYKNGKSMEIVDSRLAESASPEQVAMCIQLGLLCVQSNLELRPTMGRVIVMLSKKHGNLDEPTRPGIPGSRFRQARRHGGGSKILTDSHSNTLESSSTNTATASASARASTSASARASTS 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 218792 221216 - Bpe025351 Bpe03g00018 100523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00018 390 SMART serkin_6 52 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00018 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Bpe03g00018 390 Gene3D Phosphorylase Kinase; domain 1 17 127 - -
Bpe03g00018 390 MobiDBLite consensus disorder prediction 354 390 - -
Bpe03g00018 390 Gene3D Transferase(Phosphotransferase) domain 1 128 333 - -
Bpe03g00018 390 SUPERFAMILY Protein kinase-like (PK-like) 37 336 IPR011009 -
Bpe03g00018 390 CDD STKc_IRAK 58 324 - -
Bpe03g00018 390 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 372 - -
Bpe03g00018 390 ProSiteProfiles Protein kinase domain profile. 52 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00018 390 Pfam Protein tyrosine and serine/threonine kinase 55 320 IPR001245 GO:0004672|GO:0006468
Bpe03g00018 390 PANTHER RECEPTOR-LIKE KINASE 3 372 - -
Bpe03g00018 390 MobiDBLite consensus disorder prediction 327 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00018 Bpe-Chr3:218792 Bpe13g00354 Bpe-Chr13:11331503 5.80E-113 dispersed
Bpe03g00018 Bpe-Chr3:218792 Bpe08g00331 Bpe-Chr8:1970054 4.21E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63218 PF07714 PK_Tyr_Ser-Thr 1.90E-49 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00018 - - tcc:18609833 566.229