Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00025 ATGGCTGGCCTTGAAGAACTAAGGAAGAAGCTTGCACCATTATTTGATGCTGAAAAGGGTCTTTCTTTGGATTCATCTTTGGACCCTTCCGGTTCCTACACATTTTCAGATGGTGGAGCTGTTAACTTGTTGAGCAGATCATATGGAGTATACAATATTAACGAGTTTGGATTGCAAAAGTGCTCCTCTTGGCCTGCGGATGATACTGATCATAGTGAAAAGACATACCGATGTGCTTCGCATGAGATGAGAATATTTGGAGCAATCGGTAGTGGAGCTAGTAGTGTTGTGCAGAGAGCTATCCATATTCCCAGTCATAGAATTTTGGCTCTGAAAAAGATCAATATTTTTGAGAAGGATAAAAGGCAACAGCTTCTTACAGAGATAAGGACACTATGTGAAGCGCCATGTTACCAGGGTCTTGTAGAATTCCATGGAGCGTTTTATACTCCTGACTCTGGACAAATCAGTATAGCTTTGGAGTACATGGATGGAGGCTCGTTGGCAGACATATTACGTATGAAAAGGAAAATACCAGAGCCTGTCCTTTCTTCAATGTTCCAAAAGATTCTCCAGGGACTGAGGTACTTGCATGGAGTTAGATATTTAGTCCACAGAGATATAAAGCCAGCTAATTTGCTCATAAATCTCAAGGGTGAGCCAAAAATAACAGATTTTGGTATAAGTGCGGGATTAGAGAATTCAATGGCGATGTGCGCGACATTTGTTGGGACCGTCACATACATGTCACCTGAACGGATTCGAAATGAAAATTACTCCTATCCTGCTGACATCTGGAGCCTTGGACTTGCTCTCTTTGAGTGTGGTACTGGAGAATTCCCATATACTGCTACTGAAGGTCCAGTAAATCTCATGTTGCAGATTTTGGATGACCCGTCACCATCGCCACCAAACCACTGCTTTTCACCGGAGTTTTGCTCGTTTGTTGATTCTTGTTTGCAAAAGGATGCAGATGCTAGACCTACAGCCGAACAGTTGCTTGCACATCCATTTATCACAAAGTACGAGGATGCTCAAGTAGATTTGGCAGATTTTGTAAGAAGTGTGTTTGACCCGACACAGAGGTTGAAGGACTTGGCAGATATGCTGGCAATTCATTATTATTTGCTCTTTGATGGACCTGACGAGGTTTGGCATCACGCGCGAACCTTGTATGATGAACGATCAAATTTCAGTTTTGCAGAGAAACTCTACTTAGGCCCAAATGACATTTTCGAAACTCTGTCAAATATTCGAAGCACATTAGCGGGTGATTGGCCTCCTGAAAAGCTAGTGCATGTCGTTGAAAAGCTCCAGTGTCGAGCTCACGGAGCGGATGGAGTTGCTATTCGAGTATCCGGATCCTTTATCATCGGGAACCAGTTTCTAGTGTGTGGAGATGGAGTTCAAGTGGAGGGCTTACCCCATTTTAAAGATCTTGCTATCGATCTCGGCTCTCGCAGAATGGGGATGTTCCGCGAGCAGTTTATTATGGAGCCGAGCAGTGTGATTGGTCGATACGTTATTTCGAAACAAGAGCTGTATGTAACCCATCAGTAA 1560 43.46 MAGLEELRKKLAPLFDAEKGLSLDSSLDPSGSYTFSDGGAVNLLSRSYGVYNINEFGLQKCSSWPADDTDHSEKTYRCASHEMRIFGAIGSGASSVVQRAIHIPSHRILALKKINIFEKDKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMKRKIPEPVLSSMFQKILQGLRYLHGVRYLVHRDIKPANLLINLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNENYSYPADIWSLGLALFECGTGEFPYTATEGPVNLMLQILDDPSPSPPNHCFSPEFCSFVDSCLQKDADARPTAEQLLAHPFITKYEDAQVDLADFVRSVFDPTQRLKDLADMLAIHYYLLFDGPDEVWHHARTLYDERSNFSFAEKLYLGPNDIFETLSNIRSTLAGDWPPEKLVHVVEKLQCRAHGADGVAIRVSGSFIIGNQFLVCGDGVQVEGLPHFKDLAIDLGSRRMGMFREQFIMEPSSVIGRYVISKQELYVTHQ 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 459401 463035 - Bpe011869.2 Bpe03g00025 100530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00025 519 SUPERFAMILY NTF2-like 364 514 IPR032710 -
Bpe03g00025 519 Gene3D - 364 517 - -
Bpe03g00025 519 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00025 519 CDD PKc_MAPKK_plant_like 84 343 - -
Bpe03g00025 519 PANTHER - 2 517 - -
Bpe03g00025 519 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Bpe03g00025 519 Gene3D Transferase(Phosphotransferase) domain 1 165 363 - -
Bpe03g00025 519 Gene3D Phosphorylase Kinase; domain 1 59 164 - -
Bpe03g00025 519 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Bpe03g00025 519 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Bpe03g00025 519 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00025 519 SUPERFAMILY Protein kinase-like (PK-like) 85 356 IPR011009 -
Bpe03g00025 519 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00025 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00025 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csin:114272195 907.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00025 Bpe-Chr3:459401 Bpe13g01246 Bpe-Chr13:17706733 1.44E-72 dispersed
Bpe03g00025 Bpe-Chr3:459401 Bpe01g00601 Bpe-Chr1:3948403 6.98E-73 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe01g00601 CCT 1 327 MAP Kinase Kinase Gene Family AT4G26070 68.8 1.8e-131 465.7
Bpe13g01246 CCT 3 334 MAP Kinase Kinase Gene Family AT4G26070 61.7 2.1e-119 425.6
Bpe02g02226 . 26 374 MAP Kinase Kinase Gene Family AT4G26070 52.8 1.2e-101 366.7
Bpe01g00601 CCT 1 301 MAP Kinase Kinase Gene Family AT4G29810 72.8 5.0e-129 457.6
Bpe13g01246 CCT 4 307 MAP Kinase Kinase Gene Family AT4G29810 66.1 7.4e-117 417.2
Bpe02g02226 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 55.0 2.3e-102 369.0
Bpe03g00025 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.6 1.0e-226 782.7
Bpe02g02226 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 78.9 9.1e-166 579.7
Bpe01g00601 CCT 1 316 MAP Kinase Kinase Gene Family AT5G56580 61.5 6.9e-113 404.1
Bpe13g01246 CCT 6 322 MAP Kinase Kinase Gene Family AT5G56580 60.7 2.1e-109 392.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63219 PF00069 Pkinase 3.50E-59 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00025 Bpe_Chr03 FPKM 12.430712 12.824031 16.885965 16.816156 16.792147 15.938691 15.469242 11.23353 11.581289 12.030123