Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00033 ATGCAGCAGACCCACCACTCTGTGGTTGTGAGACTGAATGAGCAAACTGGTACAAAAAAAGGGTCCACATTCATTCAGGCTCACAGGGCTTGGCTTCCAAAATTTCTGTTACTTTGGATTATGGTTGTGGTGTTCATTAGTATGTTCATATACAATGGCATGGATGCCGACAACAAAGTTCGAAGGAAGGAAGTTTTAGGCAGCATGTGTGATCAAAGGGCAAGAATGCTTCAAGATCAATTCAGTGTTAGCGTTAACCATGTCCATGCATTGGCTATTCTCGTTTCAACCTTTCATTATTTCAAGAACCCGTCTGCAATAGATCAGGAAACTTTTGCAGAATACACGGCCAGAACTGCATTTGAGCGACCATTACTGAGTGGGGTGGCGTTTGCAGAGAGAGTAATTGATTCTGAGAGGGCTACTTTTGAGAAGCAACATGGATGGACCATAAAAACAATGGAGAGAGAGCCTTCACCTACACGGGATGAGTATGCGCCTGTCATCTTGTCTCAGGAAACTGTGTCTTACCTTAAGTCTATTGATATGATGTCAGGGGAGGAGGATCGTGAAAACATATTGAGGGCTAGGGCCACTAGGAAAGCTGTTTTGACCAGCCCCTTCAGGTTGCTAGGTTCTCATCATCTTGGAGTTGTGTTGACATTTCCTGTTTATAAATCCAAACTGCCATCCAATCCCACCGTGGAACAGCGCATACAAGCAACTGCTGGATACCTTGGCGGAGCCTTTGACATTGAATCATTGGTGGAGAATTTGCTCGGGCAACTTGCCGGAAATCAAGCAATTTTGGTGAATGTATATGATATCACTAATGCTTCTGATCTCTTAATAATGTATGGTCATCAATATCAAGATGGCGACGATTCACTTTTGCATGAGAGCAAGCTTGATTTTGGTGATCCCTTTAGGAAGCATCAAATGATATGTAGATATCATCAAAAGGCACCTACTTCATGGACAGCACTTACTACTGCGTTTTTATTCTTTGTAATTGGATTATTGGTGGGCTATATATTATATGGGGCAGCAACCCACATTGTTAAAGTAGAAGATGATTTTCATGGAATGCAGGAATTGAAAGTTCTTGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTTGCAACCGTGTCTCATGAAATCAGGACACCGATGAATGGCATCCTCGGAATGCTTGCTCTACTTCTTGATACTGATTTAAGCTCAACACAAAGAGACTATGCTCAAACGGCCCAAGCCTGTGGAAAGGCACTCATTGCATTAATAAATGAGGTGCTTGATCGGGCGAAAATCGAAGCTGGGAAGTTAGAGCTGGAAGCTGTGCCCTTTGATCTTAGATCAATACTAGACGATGTCCTCTCCTTATTTTCTGAAAAATCAAGGCACAAGGGTATAGAGCTGGCTCTATTTGTTTCCGATAAAGTTCCAGAGTTTGTCGTTGGTGATCCTGGAAGATTCAGACAAATCATCACAAATCTTGTCGGTAACTCCGTTAAATTTACAGAACAAGGACATATATTTGTTAAAGTTCACCTGGTAGAACACTCCAGGCCCACATCAAATGGAAAATCTGAAATTTACTCCAATGGAAGATCAGATGAAAGCGTGTTAATCCATGGTAGCTGCCAGTATAAAACTTTAAGTGGATACGAGGCAGCAGATGATCAAAACAGTTGGGAAAAATTCAAGCATCTTGTTTCTGAAGAAGAGTGTAAACCCGATACATTAAGCAACAGAACAGCTATGAAGGAAAATAACAATTCTGAGCACGTCACGTTAATGATATGTGTTGAGGATACAGGGATTGGAATCCCATTATGTGCCCAAAGTCGAGTTTTCATGCCTTTTGTGCAAGCAGACAGCTCAACTTCGAGACACTATGGAGGAACTGGTATTGGCTTAAGCATCAGTAAATGCTTAGTTGAATTGATGGGTGGTGGTATAAGCTTCATTAGTAAACCTCAGATTGGAAGCACGTTTTCTTTCACTGCTGTTTTTGGGAAATGTCAGAAAAATTCAGTGAATGATTTGAAAAAGACCAATTCTGAAGAACTGCCTTCTGGCTTTAGAGGATTGAAGGCCATTGTCGTAGATGGGAAGCCGGTTAGAGCATCCGTGACGAAATACCATTTGAATAGACTCGGCATTTGTGTTGAGGTTGTGAGTAGCATCAAAATGGCAGCTTCATTTCATGGCAAAAACGGTTCTACTATTGCTTCAGGGAACATGTTCGAGCCAGATGTGATTCTGGTAGAGAAAGATTCTTGGGTAGTCGAAGAGGATTGTAATTTCAATCTGCACCAGCCAGAACGTAAACCGAACGGTTGCATATTCAAATTACCAAAAATGATTCTTTTGGCAACAAATATCAGCATAGGAGAATTTGATAGAGCCAATGCTTCGGGCTTTGCAGACACTGTAATAATGAAGCCATTGAGGGCAAGCATGGTTGCAGCATGTCTTCAACAAGTACTAGGAATCGGCAAAAAGAGGCAACAAGGGAAGGACTTCCCTGGTGACTCGAAAAAGTCTATTAAAAGTTTGCTTTGTGGGAAGAAAATATTGGTGGTTGACGATAATAGGGTCAACCTGAGAGTTGCAGCCGGTGCTCTGAAGAAGTTTGGTGCCAACGTGGAATGTGCCGAGAGTGGTAAAGCTGCCATGGAGTTGCTTAAACCTCCTCACAGCTTTGATGCTTGCTTCATGGATATCCAAATGCCAGAAATGGACGGATTTGAGGCAACCTGCCGGATTCGACAGATGGAGAGCAAGGCAAATGAGCAAATGAATGGAGAATTCTCGGGCGAAGGAAACGGCCGCAAAGACAAGTGGCATGTGCCGATATTAGCAATGACAGCTGATGTAATACACGCAACTTATGAAGAGTGCTTAAAATGTGGAATGGATGGCTATGTTTCTAAGCCTTTTGAGGAAGAAAATCTTTATCAAGCTGTCTCAAAATTCTTCAACTCATAG 2997 42.21 MQQTHHSVVVRLNEQTGTKKGSTFIQAHRAWLPKFLLLWIMVVVFISMFIYNGMDADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAFAERVIDSERATFEKQHGWTIKTMEREPSPTRDEYAPVILSQETVSYLKSIDMMSGEEDRENILRARATRKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSNPTVEQRIQATAGYLGGAFDIESLVENLLGQLAGNQAILVNVYDITNASDLLIMYGHQYQDGDDSLLHESKLDFGDPFRKHQMICRYHQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHGMQELKVLAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGIELALFVSDKVPEFVVGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLVEHSRPTSNGKSEIYSNGRSDESVLIHGSCQYKTLSGYEAADDQNSWEKFKHLVSEEECKPDTLSNRTAMKENNNSEHVTLMICVEDTGIGIPLCAQSRVFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGGISFISKPQIGSTFSFTAVFGKCQKNSVNDLKKTNSEELPSGFRGLKAIVVDGKPVRASVTKYHLNRLGICVEVVSSIKMAASFHGKNGSTIASGNMFEPDVILVEKDSWVVEEDCNFNLHQPERKPNGCIFKLPKMILLATNISIGEFDRANASGFADTVIMKPLRASMVAACLQQVLGIGKKRQQGKDFPGDSKKSIKSLLCGKKILVVDDNRVNLRVAAGALKKFGANVECAESGKAAMELLKPPHSFDACFMDIQMPEMDGFEATCRIRQMESKANEQMNGEFSGEGNGRKDKWHVPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVSKFFNS 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 566964 572632 + Bpe011876.1 Bpe03g00033 100538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00033 998 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 442 IPR036097 GO:0000155|GO:0007165
Bpe03g00033 998 CDD REC_hyHK_CKI1_RcsC-like 861 992 - -
Bpe03g00033 998 Gene3D - 854 998 - -
Bpe03g00033 998 SMART HisKA_10 376 441 IPR003661 GO:0000155|GO:0007165
Bpe03g00033 998 Coils Coil 426 446 - -
Bpe03g00033 998 SMART REC_2 859 992 IPR001789 GO:0000160
Bpe03g00033 998 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 488 672 IPR003594 -
Bpe03g00033 998 ProSiteProfiles Response regulatory domain profile. 860 996 IPR001789 GO:0000160
Bpe03g00033 998 ProSiteProfiles Response regulatory domain profile. 700 832 IPR001789 GO:0000160
Bpe03g00033 998 PANTHER TWO-COMPONENT HISTIDINE KINASE 18 998 - -
Bpe03g00033 998 PANTHER HISTIDINE KINASE 4 18 998 - -
Bpe03g00033 998 Gene3D - 54 106 - -
Bpe03g00033 998 SUPERFAMILY CheY-like 858 996 IPR011006 -
Bpe03g00033 998 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310|GO:0016772
Bpe03g00033 998 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310|GO:0016772
Bpe03g00033 998 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310|GO:0016772
Bpe03g00033 998 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310|GO:0016772
Bpe03g00033 998 CDD HisKA 376 437 IPR003661 GO:0000155|GO:0007165
Bpe03g00033 998 SMART HKATPase_4 488 675 IPR003594 -
Bpe03g00033 998 Gene3D - 350 439 - -
Bpe03g00033 998 ProSiteProfiles Histidine kinase domain profile. 383 675 IPR005467 -
Bpe03g00033 998 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 430 670 IPR036890 -
Bpe03g00033 998 SMART CHASE_2 103 288 IPR006189 -
Bpe03g00033 998 Pfam Response regulator receiver domain 861 930 IPR001789 GO:0000160
Bpe03g00033 998 Gene3D - 440 678 IPR036890 -
Bpe03g00033 998 Pfam CHASE domain 106 286 IPR006189 -
Bpe03g00033 998 Gene3D CHASE domain 107 322 IPR042240 -
Bpe03g00033 998 ProSiteProfiles CHASE domain profile. 103 315 IPR006189 -
Bpe03g00033 998 CDD HATPase_EvgS-ArcB-TorS-like 493 673 - -
Bpe03g00033 998 Pfam His Kinase A (phospho-acceptor) domain 376 441 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00521 Bpe-Chr2:3397178 Bpe03g00033 Bpe-Chr3:566964 4.01E-15 dispersed
Bpe03g00033 Bpe-Chr3:566964 Bpe14g00730 Bpe-Chr14:5663226 0 dispersed
Bpe14g01237 Bpe-Chr14:9313251 Bpe03g00033 Bpe-Chr3:566964 5.34E-11 dispersed
Bpe03g00033 Bpe-Chr3:566964 Bpe05g00945 Bpe-Chr5:22382722 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21064 PF02518 HATPase_c 1.40E-29 CL0025 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00033 K14489 - tcc:18610010 1562.74