Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00056 ATGATGAGACTTCGGACATATTCAGGGCTTAGTTTTATGGCAGCTCTAGTAGTTGTTTACCATGCTTTTAGCAGCAGAGGTCAATTTTACCCAGCCATGGTTTACCTATCAACCTCAAAGATCAATTTGGTGCTTCTTCTCAACATGGGACTAGTTTTAATGTGCTTATTATGGCAATTCACAAAAAAGTTATTTCTTGGCTCTCTTCGTGAAGCAGAGATAGAGAGGCTTAATGAGCAGTCATGGAGGGAGCTGATGGAAATCCTTTTTGCAATCACTATTTTCCGGCAAGAGTTTTCTGTTACATTTCTTGCTATGGTCACAGCACTTTTGTTAATTAAAGCTTTGCATTGGCTGGCTCAGAAAAGGGTTGAGTATATTGAGACCACTCCATCTGTACCCATGTTATCCCATATTCGGATTGTTTCTTTCTTGGGATTCCTTCTTGTTCTAGATAGCCTTTTTCTTTATAGTTCCCTGATGACCATGATACCATGGAGGGCTTCAGTATACGTCTTCTTTGCATTCGAGTACATGATTCTGGCAACAACTACTGTCTCTACATTTGTTAAATATGTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAGCCGGTATACACATTTTACTTGGAACTTATTCGCGACTTGCTTCACTTGTCTACGTATCTATGCTTCTTCGCGGTGATTTTTGTGTTTTATGGTGTTCCTTTACATTTAATTCGAGAGCTCTACGAGACATTCAGGAATTTTAAGATCCGCATTGCAGATTATATACGATACCGTAAGATCACTTCAAACATGAATGATCGCATCCCAGATGCAACAATGGAAGAGCTTAATGAAAGCGATGCCACATGCATTATTTGTCGTGAAGAGATGACAATGGCAAAGAAACTAATATGTGGACATCTCTTTCACGTCCATTGTCTTCGGTCCTGGTTGGAGCGACAACATACATGTCCTACATGCCGAGCACTAGTTGTACCGCCTGAAGGAACAAGTGTAGGCGCAGATCAACGTGGATCACAGTCAGATGCTAATCAACAGGCAGGTATAGGAATTTCAAGTGTAACTGAACAGGGTTCTTCTAGTGGTGGTATGGCAAGGGATAAAGTAAGCCAGCATCAAGCCAGACTCCAAGCCGCAGCCAATGCTGCCTCAATATATGAAAGATCCTATGTTTATCCTTCTCCAAGCTCGCTGGTTTGGTCCCCTGGATATGCTGCAGTTCCTCAGATTCAAAGACCATTGCCGGAGTCTTCTAATTCTGAATTAAGTAGCGCACTTGGTTGGACAGGACAATCACAACATTTTGCAACTCCTGGTGGCCCTGCATCTTCTTCCTTTCCCCAACTTCCGCACTCGTTTTTTGTTCCTTATCAGCCTTCTGGAGACTCTGTAAATTCTGGAGTAGTGTTGTGTGATGATCCAATGGTAGCGCGATCACAGCTTGAAGCTCAAAGAAGATTTCTTGAACGCCAAATTGAGGTATAG 1509 42.21 MMRLRTYSGLSFMAALVVVYHAFSSRGQFYPAMVYLSTSKINLVLLLNMGLVLMCLLWQFTKKLFLGSLREAEIERLNEQSWRELMEILFAITIFRQEFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFLGFLLVLDSLFLYSSLMTMIPWRASVYVFFAFEYMILATTTVSTFVKYVFYVSDMLMEGQWERKPVYTFYLELIRDLLHLSTYLCFFAVIFVFYGVPLHLIRELYETFRNFKIRIADYIRYRKITSNMNDRIPDATMEELNESDATCIICREEMTMAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEGTSVGADQRGSQSDANQQAGIGISSVTEQGSSSGGMARDKVSQHQARLQAAANAASIYERSYVYPSPSSLVWSPGYAAVPQIQRPLPESSNSELSSALGWTGQSQHFATPGGPASSSFPQLPHSFFVPYQPSGDSVNSGVVLCDDPMVARSQLEAQRRFLERQIEV 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 941354 946943 - Bpe011899.1 Bpe03g00056 100561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00056 502 CDD RING-H2_synoviolin 288 329 - -
Bpe03g00056 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 335 IPR013083 -
Bpe03g00056 502 PANTHER - 1 459 - -
Bpe03g00056 502 SUPERFAMILY RING/U-box 271 335 - -
Bpe03g00056 502 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Bpe03g00056 502 MobiDBLite consensus disorder prediction 339 380 - -
Bpe03g00056 502 MobiDBLite consensus disorder prediction 341 375 - -
Bpe03g00056 502 PANTHER RING ZINC FINGER PROTEIN 1 459 - -
Bpe03g00056 502 SMART ring_2 291 328 IPR001841 -
Bpe03g00056 502 Pfam Ring finger domain 290 329 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00056 Bpe-Chr3:941354 Bpe07g00981 Bpe-Chr7:15551630 4.38E-22 dispersed
Bpe03g00056 Bpe-Chr3:941354 Bpe02g00942 Bpe-Chr2:8327128 1.68E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00056 K10601 - qsu:112000395 728.783