Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00105 ATGGGAAGAGGAAGAGTGGTGTTGGCGAGGATAGAAAACAAAATCAATCGGCAGGTTACCTTTTCAAAGAGAAGAAATGGGTTGCTGAAGAAAGCTTACGAGCTTTCTGTTCTTTGCGATGCTGAAGTTGCCCTAATCATCTTCTCCAGCCGTGGTAAACTCTTTGAATTTGGCAGCAATGACATGAACGCAATCCTTGAGAAGTACAGACAATGTTGTTATGCCCTACGAGGAAACGATGTTACTGACGATGACTCACAGGTTAGGGCCATCTGTCAAGAGGTCTCGAGATTAAAAGCGAAATATGAATCACTTCAACTTTCGCAAAGGCGATTTCTGGGAGAAGATCTTGCCTCAATAAATCTAAAAGAGTTGCAAAATATTGAGAAACAGCTTGACAAAACTCTAGCGCTAGCCAGACAGAGAAAGGTATCATTCTACTATGTATTGATAGAAGCAAAAGGATAA 468 41.24 MGRGRVVLARIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFEFGSNDMNAILEKYRQCCYALRGNDVTDDDSQVRAICQEVSRLKAKYESLQLSQRRFLGEDLASINLKELQNIEKQLDKTLALARQRKVSFYYVLIEAKG 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1595961 1598143 + Bpe011951.1 Bpe03g00105 100610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00105 155 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 146 - -
Bpe03g00105 155 Coils Coil 122 142 - -
Bpe03g00105 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe03g00105 155 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Bpe03g00105 155 Pfam K-box region 84 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe03g00105 155 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bpe03g00105 155 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe03g00105 155 ProSiteProfiles K-box domain profile. 88 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe03g00105 155 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 146 - -
Bpe03g00105 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe03g00105 155 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bpe03g00105 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe03g00105 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe03g00105 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe03g00105 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00105 Bpe-Chr3:1595961 Bpe13g00816 Bpe-Chr13:14457272 3.19E-51 dispersed
Bpe08g01465 Bpe-Chr8:15372298 Bpe03g00105 Bpe-Chr3:1595961 3.02E-43 dispersed
Bpe03g00105 Bpe-Chr3:1595961 Bpe03g00324 Bpe-Chr3:4797532 1.11E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21066 PF01486 K-box 1.10E-17 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00105 K09264 - qsu:112034717 209.534