Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00126 ATGGACAACTTTTCGAATTTATATCAGATGTTCTCTTTTGGGTCGCCGGATTGTTTGCCGGAAGTGTCAAGCTCCGAGAGCAGTACTTCTAAGGGGCCGAATTTTTCCGACGAGGAGGTAATGTTGGCGTCAAAGCATCCGAAGAAGAAGGCGGGGAGGAAGAAGTTTAAAGAGACGAGGCACTTGGTTTACAGAGGAGTGAGAAGAAGAAATTCCGGTAAGTGGGCGAGTGAGGTGAGAGAGCCCAACAAGAAGTCCAGGATTTGGTTGGGGACTTTTCAGACGGCCGAAATGGCGGCTCGGGCACATGATGTGGCGGCACTGGCCCTGAGAGGCCGGTCTGCTTGTCTGAATTTCGCCGACTCAGTTTGGCGGCTCCCCGTGCCGGATTCCGCCACCCCCAAGGACATTCAAAAGGCAGCAGCAGAAGCGGCAGAGATGTTCCGACAGGCGGAGTCCGATGGGTTGAGTTTCGACGATTCGACACAGGAAATGTCAAGAACTTGCAGCAAAACATCAGCCATTGTTGACGTATTGACGGCGGAGACATCACCAAACTGGTGGGTTTTGGACGAGGATGAGGTTTTCAGTATGCCTGGACTGCTGATGAACATGGCGGAGGGAATGTTGTTGCCGCCGCCACAGTGTATGGTAGATGCTGACGTGGGATTACAGACTGACGTGGCATTATGGAGTTACTCATTCTAA 708 52.12 MDNFSNLYQMFSFGSPDCLPEVSSSESSTSKGPNFSDEEVMLASKHPKKKAGRKKFKETRHLVYRGVRRRNSGKWASEVREPNKKSRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSVWRLPVPDSATPKDIQKAAAEAAEMFRQAESDGLSFDDSTQEMSRTCSKTSAIVDVLTAETSPNWWVLDEDEVFSMPGLLMNMAEGMLLPPPQCMVDADVGLQTDVALWSYSF 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1798623 1799330 - Bpe011971.1 Bpe03g00126 100631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00126 235 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Bpe03g00126 235 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Bpe03g00126 235 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Bpe03g00126 235 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Bpe03g00126 235 MobiDBLite consensus disorder prediction 16 55 - -
Bpe03g00126 235 MobiDBLite consensus disorder prediction 16 35 - -
Bpe03g00126 235 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 23 234 - -
Bpe03g00126 235 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Bpe03g00126 235 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Bpe03g00126 235 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Bpe03g00126 235 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Bpe03g00126 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 234 IPR045277 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00126 Bpe12g00412 CCT
Bpe03g00126 Bpe07g00954 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00126 Bpe-Chr3:1798623 Bpe12g00412 Bpe-Chr12:9705559 1.56E-77 dispersed
Bpe07g00128 Bpe-Chr7:906679 Bpe03g00126 Bpe-Chr3:1798623 1.03E-39 dispersed
Bpe03g00126 Bpe-Chr3:1798623 Bpe03g00127 Bpe-Chr3:1804297 1.31E-19 tandem
Bpe03g01247 Bpe-Chr3:31107035 Bpe03g00126 Bpe-Chr3:1798623 1.17E-45 transposed
Bpe04g00664 Bpe-Chr4:4198727 Bpe03g00126 Bpe-Chr3:1798623 2.41E-45 transposed
Bpe03g00126 Bpe-Chr3:1798623 Bpe03g00305 Bpe-Chr3:4389013 9.53E-38 wgd
Bpe03g00126 Bpe-Chr3:1798623 Bpe07g00954 Bpe-Chr7:15344622 3.33E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21067 PF00847 AP2 2.50E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00126 - K09286 nnu:104612692 263.848