Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00145 ATGGAGACGCCACTGCTGAACGGTGTTGCTGCGGGTGATTATGCGGCGGTGAGGAGCCTGAAGCAGGCGAGGGAGATGTTTTGGGCAGAAACGGTGAAGCTATGGAGGATTGGAGGTCCTATTGCTTTCACTATACTTTGTCAGTACGGAACCAACTCTCTCACTAGTATTTTCGTCGGCCATATCGGAGACGTTGAGCTCTCTTCCGTCTCCATTTCTCTCTCCGTCATCGGAACTTTCTCCTTTGGCTTCCTGCTCGGAATGGGAAGTGCATTGGAGACCCTTTGTGGGCAAGCATTTGGAGCCGGAAAAGTTCATTTACTCGGAATTTACATGCAGAGATCATGGATAATCTTATTCGTCACTTGCGTAATTCTCCTACCTATTTACATCTGCGCCACTCCGATTCTCATCGCCCTCGGACAAGACAGATCGATCGCAGATTTAGCCGGAAAATTCACAATCTTAGTAATCCCTCAACTTTTCTCTCTTTCCATCATATTTCCCACCCAGAAATTCCTCCAAGCTCAGAGCAAAGTCAACTTGATTGCATGGATTGGCTTCTGCGCCCTGCTTCTTCATGTCTTGATGCTCTGGCTCTTCATTTATGTGTTCAAATGGGGCACAACTGGCGCCGCCGTGGCCTATGATATCACCAATTGGCTGATTGCTTCTTGCCAAGTTGTTTATGCTGTGGGGTGGTGCAAAGATGGGTGGACTGGCCTTTCTTGGTCTGCTTTTAAAGAGATTTGGGCCTTTGTTAGGCTCTCTATTGCCTCTGCTGTCATGCTTTGTTTGGAACTTTGGTATATGATGAGTATTATTATTCTCACCGGACACCTCGACAATGCTGTCATCGCAGTTGGATCGCTTTCCATCTGCATGAATATCAATGGAATTGAGGCCATGATTTTTATTGGAATAAATGCTGCCATAAGTGTCCGGGTCTCGAACGAGCTCGGTCTCGGTCATCCGCGAGCTGCGAAATATGCCGTCTATGTGACGGTTCTTCAGTCTCTTCTCATCGGAATATTTTGCATGATTGTCATTTTGCTAACAAAAAATTACTTCTCTGTCATTTTCACGAGTAGTAAAAAGATGGAAGTAGCCGTTTCTCACCTAGCATTTCTTCTTGGCATAACAATGGTTCTCAATAGCGTGCAACCTGTTATTTCTGGAGTTGCTGTTGGAGGAGGATGGCAAGCTATTGTTGCGTATATTAACCTCGGGTCGTACTACATTATTGGCCTCCCCCTTGGATATTTGCTCGGATACAGAGCGAATTTAGGCGTGAAGGGACTTTGGGGAGGAATGATATGTGGAACTGGTTTACAAACCTTAGTGCTCCTGTATGTACTTTATAGAACAAACTGGAACAAAGAGGTAGAAGAGACGACAGAACGCATGCGGAGATGGGGTGGGCAGGACTTGAACTCGGAGGAAATAGTTGAGAACGCGTGA 1461 46.2 METPLLNGVAAGDYAAVRSLKQAREMFWAETVKLWRIGGPIAFTILCQYGTNSLTSIFVGHIGDVELSSVSISLSVIGTFSFGFLLGMGSALETLCGQAFGAGKVHLLGIYMQRSWIILFVTCVILLPIYICATPILIALGQDRSIADLAGKFTILVIPQLFSLSIIFPTQKFLQAQSKVNLIAWIGFCALLLHVLMLWLFIYVFKWGTTGAAVAYDITNWLIASCQVVYAVGWCKDGWTGLSWSAFKEIWAFVRLSIASAVMLCLELWYMMSIIILTGHLDNAVIAVGSLSICMNINGIEAMIFIGINAAISVRVSNELGLGHPRAAKYAVYVTVLQSLLIGIFCMIVILLTKNYFSVIFTSSKKMEVAVSHLAFLLGITMVLNSVQPVISGVAVGGGWQAIVAYINLGSYYIIGLPLGYLLGYRANLGVKGLWGGMICGTGLQTLVLLYVLYRTNWNKEVEETTERMRRWGGQDLNSEEIVENA 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1947882 1950804 - Bpe011988.1 Bpe03g00145 100650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00145 486 TIGRFAM matE: MATE efflux family protein 40 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe03g00145 486 CDD MATE_eukaryotic 30 464 IPR045069 GO:0042910|GO:1990961
Bpe03g00145 486 PANTHER PROTEIN DETOXIFICATION 12 468 - -
Bpe03g00145 486 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 468 - -
Bpe03g00145 486 Pfam MatE 260 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe03g00145 486 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00145 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - pvy:116139562 771.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00145 Bpe-Chr3:1947882 Bpe11g01788 Bpe-Chr11:14196233 1.60E-157 dispersed
Bpe03g00145 Bpe-Chr3:1947882 Bpe03g00147 Bpe-Chr3:1967813 0 proximal
Bpe06g00337 Bpe-Chr6:14796828 Bpe03g00145 Bpe-Chr3:1947882 0 transposed
Bpe14g00989 Bpe-Chr14:7311780 Bpe03g00145 Bpe-Chr3:1947882 0 transposed
Bpe03g00145 Bpe-Chr3:1947882 Bpe03g00273 Bpe-Chr3:3758139 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g739 . . . . Bpe03g00145 . Bma10g01238 Bma14g02051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo09g00072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000562 2 4 7 5 5 3 4 3 3 4 3 3 4 3 4 4 3 5 4 3 3 5 3 3 3 3 3 3 3 3 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00145 Bpe_Chr03 FPKM 62.814587 67.770493 87.47377 90.8228 77.937012 93.218567 78.5158 93.54982 103.201958 97.343361