Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00149 ATGGCGAGAAAAGGTCCTTTCATGGAGACCCAACACCTCCACTTTCTCTGTCTAGTTCTTCTCTCTCTGCTCCCCACTTTCTCTGCCTCCTTTGTTCCCTTAGATAATTACCTGCTCAATTGTGGGTCAGCCACGAACTCCTCGTTTTTTAACAGAATATTTATCGGCGATTCGACGAAATCCGGCTCCGTATTTCTCTCTTCGGACCGATCAGTTTCGGTTAAAGACCCAAACCCGCCTACGAATTCACCCAGTTTGTACTATACAGCGAGAGTTTTCACAAGCTCTTCAAGCTATCGATTCGGCATCAAGAAAAACGGGACACATTTGGTTCGTTTCCACTTCTCGCCTTTTGTAGTTCGAGATTTCGCTTTGGCCTCTGCCAGTTTTAGCATTTTGGTTAATGGATTTTTGCTTTTGAGTGATTTCCATGCTCGAAATACTACGATTAAGGAGTACATATTGACAGTGGATGATAGTCTTCTTCAAATTGTGTTTGAGCCCTTGGGCGATTCGGGTTTTGGATTTGTGAATGCCATTGAAGTCTTTTCTGCTCCTTTGGAGCTAATTAACGATAATGGAGCAAGATTAGTTGGGGAAATTGGGGTTGGAGAATACTTCAATCTTTCATCACAAGTTCTAGAGACTGTTCTTAGGATTAATGTTGGTGGGTATGATATCACACCTTTCAATGACACTTTGTGGAGAACTTGGGTTCCTGACGATAATTTTTTGGTCCTTAAATCGGCTGCTTCACAAGCTGTCACAACCCGTCCTCCAAATTACAAGGACTCCCTTTTAAGTCGAGAGATTGCTCCGGATAATGTTTATATGACAGCCCAGCAAATGAATAAAAATGCAACTTTGGGGGCAAAATTCAATATCACTTGGAGTTTTCCGGTTGGTAGAAGAGGCGGAATGCACTTAGTCAGGTTGCATTTCTGCGATATTGTTAGTTCAGCCCTTAATTTGTTGTATTTTAACGTATATATCAATGGCTATTCTGCCTATGCCGATATGGATTTGTCCTCTCTTTCCTTCCATTTACTTGCATCGCCTGTTTACATTGATTTTATCGTGGATTCGGATGATAATGGAGTCATACAAGTAAGTGTCGGCCCTTCTGCTCTTAGCAGTCCTATGAGACTGAATGCAATTTTGAATGGTGCAGAGATCATGAGAATGGTGAGTGTGAATGACAGTAGAACACAAAGACGAACTAAGGAAAAAGATAAATGGATCTTATTAGGTTCGATTGTTGGCGGGTTCATAGGTTTATGTGTGATTGTAGTCATTATCTTCCTCGGTATAAAATGCAGGAAGAAGAAGAAACCTAAGCCGAGACGAGCAGAAAGTGGAGGTTGGACCTCATTGCATGCATTTGGCGGCAGTTCGATCAGTAGAATGACTGAGGGAAGAACTTTTGGATCTCCTGGTCCAAATGGTTATTATAGTTTGAAGATACCATTTAACGACGTGAAATTAGCGACAAAAGATTTCGACAAGAGTTTGATTATAGGTTCTGGTGGATTTGGCATGGTTTATAAGGGAGTTCTTAGAGACAATACGAAAGTTGCCGTGAAGAGAGCCCTACCTGGATCCAGGCAGGGCCTACCGGAATTCCAAACGGAAATAACAGTTTTGTCCAAAATCCGGCATCACCATCTTGTTTCTCTTGTTGGGTATTGTGAGGAACAATCAGAAATGATATTGGTTTATGAGTATATGGAAAAGGGTCCGTTGAAAACTCATTTATACGGTTCAAGATTTTCCCCCCTGTCTTGGAAGCAACGGCTCGAAATATGCATTGGTTCGGCCAGAGGTCTTCACTACCTCCATACGGGTTTTGCTCAAGGTATCATCCATCGCGATATCAAGTCAACGAACATTCTGCTAGATGACAATTATGTCCCCAAAGTTGCGGATTTCGGTCTTTCGAGATCAGGGCCATGTCTAGATGAAACCCATGTGAGCACAGGAGTGAAAGGTAGTTTCGGTTACTTGGATCCAGAATATTTCCGAAGGCAACAATTAACCGATAAATCAGACGTTTATTCTTTTGGTGTGGTGCTTTTAGAGGTTCTTTGTGCTAGACCTGCTGTCGATCCATTGCTTGCAAGAGAACAAGTGAATCTAGCTGAATGGGCAATGGAGTGGCAAAAGAAAGGCATGCTTGAACAAATAATTGACCCCAAACTTGTTGGGAAAATCAATTTAAGTTCTTTAAAGAAATTTGGAGAAACAGCTGAGAAATGTTTGTCTGATTACGGAGTTGATAGGCCTTCGATGGGCGATGTTTTATGGAACTTGGAATATGCACTTCAACTCCAAGAAAATGGATCGGTAAATGAACAAGACGCCCTTGTTGTAAATCCAACAGAGGTTCAAGCTCTCCAGATTTCTGCTGATTTTCCTGCCTCTATCTCAAGAAGAGAGGAAGAAGAAGACAGTGGCCGGTCGGACATAAGTACGAGCAAAGTGTTTTCCCAGTTGATGAATAATGCAGGCAGATAG 2514 42.04 MARKGPFMETQHLHFLCLVLLSLLPTFSASFVPLDNYLLNCGSATNSSFFNRIFIGDSTKSGSVFLSSDRSVSVKDPNPPTNSPSLYYTARVFTSSSSYRFGIKKNGTHLVRFHFSPFVVRDFALASASFSILVNGFLLLSDFHARNTTIKEYILTVDDSLLQIVFEPLGDSGFGFVNAIEVFSAPLELINDNGARLVGEIGVGEYFNLSSQVLETVLRINVGGYDITPFNDTLWRTWVPDDNFLVLKSAASQAVTTRPPNYKDSLLSREIAPDNVYMTAQQMNKNATLGAKFNITWSFPVGRRGGMHLVRLHFCDIVSSALNLLYFNVYINGYSAYADMDLSSLSFHLLASPVYIDFIVDSDDNGVIQVSVGPSALSSPMRLNAILNGAEIMRMVSVNDSRTQRRTKEKDKWILLGSIVGGFIGLCVIVVIIFLGIKCRKKKKPKPRRAESGGWTSLHAFGGSSISRMTEGRTFGSPGPNGYYSLKIPFNDVKLATKDFDKSLIIGSGGFGMVYKGVLRDNTKVAVKRALPGSRQGLPEFQTEITVLSKIRHHHLVSLVGYCEEQSEMILVYEYMEKGPLKTHLYGSRFSPLSWKQRLEICIGSARGLHYLHTGFAQGIIHRDIKSTNILLDDNYVPKVADFGLSRSGPCLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEVLCARPAVDPLLAREQVNLAEWAMEWQKKGMLEQIIDPKLVGKINLSSLKKFGETAEKCLSDYGVDRPSMGDVLWNLEYALQLQENGSVNEQDALVVNPTEVQALQISADFPASISRREEEEDSGRSDISTSKVFSQLMNNAGR 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1981649 1984545 + Bpe011993.1 Bpe03g00149 100654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00149 837 MobiDBLite consensus disorder prediction 822 837 - -
Bpe03g00149 837 Gene3D Phosphorylase Kinase; domain 1 478 575 - -
Bpe03g00149 837 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Bpe03g00149 837 PANTHER OS07G0166700 PROTEIN 24 782 IPR045272 GO:0004714|GO:0006468
Bpe03g00149 837 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 24 782 - -
Bpe03g00149 837 Pfam Protein tyrosine and serine/threonine kinase 505 699 IPR001245 GO:0004672|GO:0006468
Bpe03g00149 837 ProSiteProfiles Protein kinase domain profile. 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00149 837 MobiDBLite consensus disorder prediction 807 821 - -
Bpe03g00149 837 Pfam Malectin-like domain 39 394 IPR024788 -
Bpe03g00149 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Bpe03g00149 837 CDD STKc_IRAK 506 771 - -
Bpe03g00149 837 SUPERFAMILY Protein kinase-like (PK-like) 482 771 IPR011009 -
Bpe03g00149 837 SMART serkin_6 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00149 837 Gene3D Transferase(Phosphotransferase) domain 1 576 795 - -
Bpe03g00149 837 Gene3D - 213 396 - -
Bpe03g00149 837 Gene3D - 36 186 - -
Bpe03g00149 837 MobiDBLite consensus disorder prediction 807 837 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00149 - - - zju:107407384 1143.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00149 Bpe-Chr3:1981649 Bpe11g00498 Bpe-Chr11:3842006 0 dispersed
Bpe03g00149 Bpe-Chr3:1981649 Bpe01g00156 Bpe-Chr1:869534 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63223 PF12819 Malectin_like 8.60E-32 CL0202 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00149 Bpe_Chr03 FPKM 4.729145 4.35895 0.886575 0.70414 2.477492 1.779418 1.882962 0.0 0.062324 0.0