Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00165 ATGGCTCAGGTGGTGGCTACGAGGTCCATTCAGAACGCATTCGCGAGTCCCAGTGTTGGATCCATACAGGACCGAGCGGAGAAGCTCAGGCCTTGGAGTTCCAGTGTTGATTTCAAGGTTCTCGTCCACAAGGAGAAGAGGAGCTCCGGTGTGGCTTTTCGAAGCTCTTGCATTGCTGCTAAGAAGGCATCTCAAGCTCCAGTCCTACCTGTTTCGCCTGAGGACGTTCAGAAGACGGAGGAGGAATTTCAGCATTTACGAGAAATCCAACAACTCGGTGACACTTCTGTGGCTATGTGGACCAAGCCAATTGTTAGACGGAAGACAAAAATTGTTTGCACGATTGGTCCGTCAACCAACACAAGGGAAATGATTTGGAAACTGGCTGAGGCTGGAATGAATGTTGCCCGTATGAATATGTCTCATGGAGACCATGCATCTCATCAAAAAGGTCCTGAGGTTAGAAGTGGTGATCTGCCACAACCAGTCACATTGACACCAGGACAAGAGTTTACTTTCACAATTCGCCGAGGTGTTGGCACTATGGACTGTGTCAGTGTCAACTACGATGATTTTGTTAATGATGTGGAAGTGGGTGACATGCTTCTGGTTGATGGTGGGATGATGACATTGATGGTGAAGTCTAAAACAGATGATTCAGTGAAATGCGAAGTAATTGATGGAGGGGAGCTTAAATCTAGGCGACATTTGAATGTACGAGGAAAAAGTGCAACTCTTCCTTCCATTACAGAAAAGGACTGGGATGATATTAAATTTGGAGTTGAGAACAAAGTTGACTTTTATGCCGTTTCGTTTGTTAAAGACGCTCAAGTTGTTCATGAATTGAAGAATTATCTTCAAGCTTGTGGTGCTGATATACATGTCATTGTGAAGATTGAAAGTGCAGACTCCATTCAAAATTTGCATTCGATCATCACGGCATCTGATGGGGCAATGGTTGCTAGGGGAGATCTCGGTGCAGAGCTTCCAATAGAAGAGGTTCCACTCCTGCAGGAGGAAATAATTCGGATGTGTCGAAGCATGGGGAAGGCTGTTATTGTAGCGACAAATATGCTGGAGAGCATGATTGTCCATCCAACACCAACCAGAGCCGAGGTCTCGGACATTGCCATTGCAGTTCGAGAAGGTGCTGATTCAGTCATGCTCTCTGGAGAAACCGCTCATGGAAAATTTCCATTAAAAGCTGTGAAAGTCATGCACACTGTCTCGTTACGAACTGAAGCGACCATAACTGGTGGTCAAATGCCATTGAATCTCGGTCAAGTCTTCAAGAATCACATGAGTGAGATGTTTGCTTACCATGCCACCATGATGTCTAACACTCTCGGGACGTCTATCCTTGTTTTCACCCGAACTGGCTTCATGGCCATCCTTCTTAGTCATTACCGGCCTTCTGGCACCATATACGCCTTTACAAACGATAAACGGATACAACAGAGGCTGGCTTTATATCAAGGGGTGTGTCCCATTTACATGGAGTTCTCTGATGATGCCGAAGAAAGCTTTGCTAGCGCTGTATCTCTCTTGCAGAAGCAGGGAATGGTGAAGGCAGGAGAAGAAGTAGCTCTTCTCCAGAGTGGCAGACAACCGATTTGGCGGATTCCATCGACCCACAATATTCAAGTTAGAAAAGTATAG 1659 45.87 MAQVVATRSIQNAFASPSVGSIQDRAEKLRPWSSSVDFKVLVHKEKRSSGVAFRSSCIAAKKASQAPVLPVSPEDVQKTEEEFQHLREIQQLGDTSVAMWTKPIVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARMNMSHGDHASHQKGPEVRSGDLPQPVTLTPGQEFTFTIRRGVGTMDCVSVNYDDFVNDVEVGDMLLVDGGMMTLMVKSKTDDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVENKVDFYAVSFVKDAQVVHELKNYLQACGADIHVIVKIESADSIQNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRMCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADSVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGQMPLNLGQVFKNHMSEMFAYHATMMSNTLGTSILVFTRTGFMAILLSHYRPSGTIYAFTNDKRIQQRLALYQGVCPIYMEFSDDAEESFASAVSLLQKQGMVKAGEEVALLQSGRQPIWRIPSTHNIQVRKV 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2101916 2106525 + Bpe012011.1 Bpe03g00165 100670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00165 552 ProSitePatterns Pyruvate kinase active site signature. 293 305 IPR018209 GO:0004743|GO:0006096
Bpe03g00165 552 Pfam Pyruvate kinase, barrel domain 149 418 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 Gene3D - 107 149 IPR040442 -
Bpe03g00165 552 Gene3D - 425 552 IPR036918 -
Bpe03g00165 552 Gene3D - 153 246 IPR015806 GO:0004743|GO:0006096
Bpe03g00165 552 PANTHER PYRUVATE KINASE 38 552 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 PRINTS Pyruvate kinase family signature 295 321 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 PRINTS Pyruvate kinase family signature 347 371 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 PRINTS Pyruvate kinase family signature 372 390 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 PRINTS Pyruvate kinase family signature 322 346 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 PRINTS Pyruvate kinase family signature 391 407 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 PRINTS Pyruvate kinase family signature 141 157 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 PRINTS Pyruvate kinase family signature 265 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 SUPERFAMILY PK C-terminal domain-like 401 552 IPR036918 -
Bpe03g00165 552 MobiDBLite consensus disorder prediction 142 163 - -
Bpe03g00165 552 Gene3D - 150 409 IPR040442 -
Bpe03g00165 552 Pfam Pyruvate kinase, alpha/beta domain 440 532 IPR015795 -
Bpe03g00165 552 PANTHER PLASTIDIAL PYRUVATE KINASE 2 38 552 - -
Bpe03g00165 552 TIGRFAM pyruv_kin: pyruvate kinase 150 549 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe03g00165 552 SUPERFAMILY PK beta-barrel domain-like 152 243 IPR011037 -
Bpe03g00165 552 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 91 417 IPR015813 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00165 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - zju:107414649 923.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00165 Bpe-Chr3:2101916 Bpe05g00875 Bpe-Chr5:21917971 3.11E-115 dispersed
Bpe03g00165 Bpe-Chr3:2101916 Bpe11g00349 Bpe-Chr11:2539029 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00165 Bpe_Chr03 FPKM 37.05624 38.936165 29.536825 28.495638 29.91497 28.239309 29.123514 25.584129 24.626385 24.137159