Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00167 ATGGAGGCCACATCCTCTGTGTTTTGTGGGGATTCTGATTGTATCAATAGAGAAGCAGGGGAATGTAGTTATAGTTTTGACTATCTGGCTAATCCCTCTTCATGCATTTACCCAGCAATTGTCGTGTTCTTCAATGTTGTTCTTTTACTTGTGCTTTTATTAGTAATGCTGAGGAGGAAATCATCGGTTTATATGTCTACCATTCGATTCCAAAACTATTCGAATTGGGAAATTTGTGTACTGCTTTTTAATGTCTGTCTCGGACTTACATATTTGGGCTTGGGAGTTTTGAAATTAGAAGAAAGTTGGAGGAAAATGCACACTGGTCTGCCTCTTAGTTTATGGTTCTCGACGATTTTTCAGGGTTTGACTTGGATTCTGGTAAATATAATCATAATTACTCGAGGCAAACAGCTTCCGGGAGCGATTCTTCGCCTTTTGTCTGTGCTTGCAGTTGCATTTTCTGCCATAATTTGTGCTTTATCACTGGCTTTTTTCATGGCCAGCAAGGTTTTATCATTGAAGATAGCTTTGAATGTTTTATCTTTTCCAGGAGCTTTTCTCTTGATGATTTTCACTTATAAGATGTCCAAATTTGAAGCCAGTGAGTTGAGTTTGGAGGAAAAGGACCTCTATACACCATTGAATGGCGAGGTGAATAGAACTAGCACTATAGATCCTGTCACTCCGTTTGCTAAGGCCGGATTCTTTAGCCAAATGTCGTTTTGGTGGTTGAATTCTTTGTTGAAAAGAGGAAGAGAAAAAACTCTCGAGGACAAAGATATTCCTAAACTACGCCAAAACGATCGAGCAGAGAGTTGTTATATGAAGTTCTTAGAAAAATTGAACAAGCAAAAACAAATAGAATCATCTTCGCAGCCGTCGATCTTGAGGACGATAATCCTATGCCATTGGAAGGAGATTTTACTATCTGGGTTCTTTGCACTTTTGAAGATTCTCACTGTCTCTGCAGGTCCTCTTCTTCTCAATGCCTTCATTTCAGTTGCAGAAGGAAAATCGAGCTTTAAATATGAAGGCTATGTTCTTGCTGTGTCTCTTTTTCTCTCGAAGAGCCTCGAATCCTTATCGCAAAGACAGTGGTATTTTAGGAGCAGACTTATAGGTCTTCAAGTCAGGTCTTTACTCACAGCTGCCATTTACAAGAAGCAATTGAAATTATCAAATGCTGGAAAGTTGATCCATTCAGGAGGTGAGATTATGAATTATGTGACAGTCGATGCCTATCGAATTGGAGAATTCCCATATTGGTTCCATCAAACTTGGACGACGAGCCTGCAGCTCTGCATTGCACTTGTAATTCTATTCCGTGCCGTTGGGTTGGCGACGATTGCAGCTTTAATCACAATTGTTCTATGCGTTCTTTGCAATGCCCCCATTGCTAAATTGCAGCTCAAATATCAAACCCAGCTCATGCTGGCCCAAGACGAGAGGTTGAGAGCTTGTAATGAAGCTCTTACCAACATGAAAGTTCTTAAATTATATGCATGGGAAACTCATTTCAAACAAGCGATCGAGAAATTAAGGAAAAACGAGTGTAAATGGTTGTCGGGAGTGCAGCTTCGAAAGTCTTATAATGGCTTTCTCTTTTGGACATCTCCTGTTTTGGTTTCGGTTGCTACCTTTGGAGCTTGTTACTTCCTTAAAGTTCCTCTATATGCAAGTAATGTTTTCACCTTTGTTGCTACTTTACGGCTTGTTCAAGACCCGATTCGATCTATCCCTGATGTCATTGGAGTTGTCATTCAAGCTAAAGTTTCATTTGCTCGTATTTTGAAGTTTCTAAAGGCGCCTGAGCTTCATAGCACTAATGCTCGCCAAAAGTGGAACGCAGAGAGTTTAAGCCATGCCGTTTTCATAGACTCAGCAGATTTTTCGTGGGAACAGAATTCCCCTAAGCCGACACTTAGGAATATTGATTTGGTTGTCAAGTCGGGCGAAAAGGTGGCTATCTGCGGCGAAGTTGGCTCAGGGAAATCAACGCTTCTTGCAGCGATTCTCGGTGAAATTTCAAAATATAAAGGGGAAATTCAAGTTTATGGGAAGATAGCTTATGTTTCTCAAACCGCATGGATTCAAACGGGGACAATACAAGACAACATTCTATTTGGCACCGAGATGGATTCGCAAAGATATCAAGAAACACTAGAGATGTGTTCGTTGGTAAAGGATCTCGAGTTGTTTCCGTATGGCGATCTAACTGAAATAGGAGAAAGAGGAGTGAATCTTAGTGGTGGTCAAAAGCAGCGGATTCAACTTGCTCGAGCTCTATATCAAGATGCTGACATTTACCTCTTGGACGATCCGTTTAGTGCCGTTGATGCTCATACTGCGACGAATTTGTTCAATGATTACGTTATGAAAGCACTTTCAGGAAAGTCTGTTTTGCTTGTGACTCATCAAGTTGATTTCCTACCGACATTCGATTCTGTTTTGTTAATGTCAGATGGAGAAATCCTACAAGCTTCTTCCTACCATCAATTATTAGCTTCAAGTAAAGAATTCCAAGAACTAGTCAATGCACACAAGGAGACTGCCGGAACTGAACGGCTCACAGATGGTACTTCTACCCAAAATATGGAAACACCTTCTCGAGAGATTAAGATGACTTTCATGGAGAAAAAAGTAACATCCTCCAATGCCAATCAATTAATTTTGAAAGAAGAAAGAGAAATAGGAGACACTGGATTCAAGCCTTACATTCAGTATCTGAATCAGAACAAAGGGTTCTTGTATTATTCCTTATCCATCCTCTCTCATCTTATATTCGTGATTGGACAGACTTCACAAAACTATTGGATGGCATCCAATGTCGACAATCCGAATGTCACCCCATTGCATTTGATCGTAGTTTACTTGGTGATTGGAGTCTCTTCAACCGTTTTCTTATTGACTCGATCTCTCTCTTCTGTGACTTTAGGCCTTCAATCGTCAAAGTCATTGTTCTCTCAACTCTTAAACTCTCTTTTTCGGGCTCCTATGTCATTTTACGACTCCACACCCATTGGAAGAATACTTAGCCGGGTATCCTCTGATCTAAGTGTGGTCGATCTCGATGTGCCATTCGCTTTTGTTTGGGCCAGTGGGGCCACCATTAATGCTTATGCAGGTCTTGCAGTGTTAGCTGTCATAACATGGCAAGTTCTCTTCGTCTCCATTCCGATGCTTTTTATCTCCATGCGCTTGAAGAAATATTACTTTGCCTCAGCTAAAGAATTGATGCGTATTAATGGCACGACCAAATCTCCTTTCTTCCACAATTTCTCGGCAACCGAGTGGTTGATTCAACGACTAGAAATGCTCAGTGCCACCATTCTTGCCTCGGCTGCACTTGCCATGGTTTTGCTTCCTCCTGGAACCTTCAGCCCTGGATTCATTGGAATGGCACTTTCTTATGGACTTTCTCTCAACATGTCGTGGGTTTTTTCCATACAAAATCAATGCACTTTGGCAAATTACATCATCTCTGTTGAAAGAGTAAACCAATATATGCATATACCCAGTGAAGCTCCAGAAGTGATCGAACAAAACCGTCCGCCTAGCAGTTGGCCTTCTGTCGGCAAAGTGCAAATACTTGATTTGCAGATTCGATATCGGCCTAATGCGCCTCTCGTTCTTCGAGGGATTAACTGCACATTTGATGGCGGTTATAAGATAGGGATTGTCGGCCGCACCGGCAGTGGGAAGACTACTCTTATTGGAGCTCTATTTCGATTGGTGGAGCCTGCTGGAGGAAGGATAATTGTCGATGGGATTGACATATGCACGATTGGACTTCATGATCTAAGATCCCGATTCGGAATTATACCTCAAGATCCAACCCTTTTCAATGGAACTGTTAGATATAATTTGGACCCCTTGTCCCAACATTCCGACCAGCAATTGTGGGAGGTTCTCAGAAAGTGTCAGCTCCGAGAAGCGGTGCAAGAGAAAGGTGGCTTGGACTCACCAGTTATGGAAGAAGGTTCAAATTGGAGCATGGGGCAGAGACAGTTGTTCTGTTTAGGCCGCGCCCTCTTGAGAAGAAGTCGTATATTGGTACTTGATGAAGCAACTGCTTCAATCGACAACACGACCGATATGATTTTGCAGAAAACGATTCGATCGGAATTTGCAGATTGTACTGTAATCACAGTCGCTCATCGGATTCCAACGGTGATGGATTGCACGATGATTCTTGCCATTAGCGATGGTGACATTGTCGAGTATGATGAGCCGAAGACGTTGATGAAGCGGGAAGACTCACTGTTTGGACAGCTGGTGAAAGAATACTGGTCTCATTCTCAGACAGCTGAATTAATATGA 4323 41.94 MEATSSVFCGDSDCINREAGECSYSFDYLANPSSCIYPAIVVFFNVVLLLVLLLVMLRRKSSVYMSTIRFQNYSNWEICVLLFNVCLGLTYLGLGVLKLEESWRKMHTGLPLSLWFSTIFQGLTWILVNIIIITRGKQLPGAILRLLSVLAVAFSAIICALSLAFFMASKVLSLKIALNVLSFPGAFLLMIFTYKMSKFEASELSLEEKDLYTPLNGEVNRTSTIDPVTPFAKAGFFSQMSFWWLNSLLKRGREKTLEDKDIPKLRQNDRAESCYMKFLEKLNKQKQIESSSQPSILRTIILCHWKEILLSGFFALLKILTVSAGPLLLNAFISVAEGKSSFKYEGYVLAVSLFLSKSLESLSQRQWYFRSRLIGLQVRSLLTAAIYKKQLKLSNAGKLIHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSLQLCIALVILFRAVGLATIAALITIVLCVLCNAPIAKLQLKYQTQLMLAQDERLRACNEALTNMKVLKLYAWETHFKQAIEKLRKNECKWLSGVQLRKSYNGFLFWTSPVLVSVATFGACYFLKVPLYASNVFTFVATLRLVQDPIRSIPDVIGVVIQAKVSFARILKFLKAPELHSTNARQKWNAESLSHAVFIDSADFSWEQNSPKPTLRNIDLVVKSGEKVAICGEVGSGKSTLLAAILGEISKYKGEIQVYGKIAYVSQTAWIQTGTIQDNILFGTEMDSQRYQETLEMCSLVKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATNLFNDYVMKALSGKSVLLVTHQVDFLPTFDSVLLMSDGEILQASSYHQLLASSKEFQELVNAHKETAGTERLTDGTSTQNMETPSREIKMTFMEKKVTSSNANQLILKEEREIGDTGFKPYIQYLNQNKGFLYYSLSILSHLIFVIGQTSQNYWMASNVDNPNVTPLHLIVVYLVIGVSSTVFLLTRSLSSVTLGLQSSKSLFSQLLNSLFRAPMSFYDSTPIGRILSRVSSDLSVVDLDVPFAFVWASGATINAYAGLAVLAVITWQVLFVSIPMLFISMRLKKYYFASAKELMRINGTTKSPFFHNFSATEWLIQRLEMLSATILASAALAMVLLPPGTFSPGFIGMALSYGLSLNMSWVFSIQNQCTLANYIISVERVNQYMHIPSEAPEVIEQNRPPSSWPSVGKVQILDLQIRYRPNAPLVLRGINCTFDGGYKIGIVGRTGSGKTTLIGALFRLVEPAGGRIIVDGIDICTIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQQLWEVLRKCQLREAVQEKGGLDSPVMEEGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNTTDMILQKTIRSEFADCTVITVAHRIPTVMDCTMILAISDGDIVEYDEPKTLMKREDSLFGQLVKEYWSHSQTAELI 1440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2125108 2130901 - Bpe012013.1 Bpe03g00167 100672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00167 1440 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1088 1438 - -
Bpe03g00167 1440 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 71 1088 - -
Bpe03g00167 1440 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1195 1428 IPR003439 GO:0005524
Bpe03g00167 1440 Gene3D ABC transporter type 1, transmembrane domain 297 598 IPR036640 GO:0005524|GO:0016021
Bpe03g00167 1440 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1088 1438 - -
Bpe03g00167 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 847 IPR027417 -
Bpe03g00167 1440 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 71 1088 - -
Bpe03g00167 1440 Pfam ABC transporter 1212 1359 IPR003439 GO:0005524
Bpe03g00167 1440 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Bpe03g00167 1440 Gene3D ABC transporter type 1, transmembrane domain 881 1176 IPR036640 GO:0005524|GO:0016021
Bpe03g00167 1440 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Bpe03g00167 1440 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bpe03g00167 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1186 1426 IPR027417 -
Bpe03g00167 1440 SMART AAA_5 651 824 IPR003593 -
Bpe03g00167 1440 SMART AAA_5 1221 1412 IPR003593 -
Bpe03g00167 1440 CDD ABC_6TM_ABCC_D2 915 1170 IPR044726 GO:0140359
Bpe03g00167 1440 Gene3D - 599 869 IPR027417 -
Bpe03g00167 1440 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1095 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bpe03g00167 1440 CDD ABCC_MRP_domain2 1193 1412 - -
Bpe03g00167 1440 SUPERFAMILY ABC transporter transmembrane region 297 597 IPR036640 GO:0005524|GO:0016021
Bpe03g00167 1440 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Bpe03g00167 1440 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Bpe03g00167 1440 CDD ABCC_MRP_domain1 626 824 - -
Bpe03g00167 1440 Gene3D - 1178 1429 IPR027417 -
Bpe03g00167 1440 SUPERFAMILY ABC transporter transmembrane region 921 1175 IPR036640 GO:0005524|GO:0016021
Bpe03g00167 1440 Pfam ABC transporter transmembrane region 309 568 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bpe03g00167 1440 Pfam ABC transporter transmembrane region 920 1081 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00167 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - qsu:112020205 2098.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00167 Bpe-Chr3:2125108 Bpe06g00770 Bpe-Chr6:17990810 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00167 Bpe_Chr03 FPKM 6.647491 7.406113 3.93113 3.854123 1.950713 2.744363 2.738472 6.246067 6.233333 6.666994