Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00169 ATGGCGTCGAAGCGCATCTTGAAGGAACTTAAGGATTTGCAGAAGGATCCTCCTACATCTTGCAGCGCTGGTCCAGTTGCAGAAGATATGTTTCACTGGCAGGCCACCATAATGGGTCCTTCAGACAGTCCTTATGCCGGTGGCATTTTCCTCGTCACTATCCACTTTCCTCCTGATTATCCCTTCAAGCCTCCAAAGGTGGCTTTCAGGACAAAGGTTTTTCATCCTAATATAAACAGCAATGGAAGTATTTGTCTCGACATACTGAAAGAGCAGTGGAGCCCAGCCCTTACCATCTCCAAGGTCTTGCTTTCGATCTGTTCTCTGTTGACCGACCCAAATCCTGACGATCCGTTGGTTCCTGAGATCGCTCACATGTACAAGACCGACAGGAGTAAGTATGAGACAACCGCAAGAAGTTGGACCCAGAAATATGCTATGGGTTAA 447 47.43 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGIFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2142145 2144868 + Bpe012015.1 Bpe03g00169 100674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00169 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Bpe03g00169 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Bpe03g00169 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Bpe03g00169 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Bpe03g00169 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Bpe03g00169 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Bpe03g00169 148 SMART ubc_7 4 147 - -
Bpe03g00169 148 CDD UBCc 3 142 IPR000608 -
Bpe03g00169 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00169 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - pop:7497821 310.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00169 Bpe12g00368 CCT
Bpe03g00169 Bpe12g00368 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00173 Bpe-Chr2:1208484 Bpe03g00169 Bpe-Chr3:2142145 8.14E-35 dispersed
Bpe03g00169 Bpe-Chr3:2142145 Bpe07g01004 Bpe-Chr7:15717423 1.71E-108 dispersed
Bpe03g00854 Bpe-Chr3:28347802 Bpe03g00169 Bpe-Chr3:2142145 3.48E-44 dispersed
Bpe04g00392 Bpe-Chr4:2463540 Bpe03g00169 Bpe-Chr3:2142145 5.91E-35 dispersed
Bpe05g00811 Bpe-Chr5:21428564 Bpe03g00169 Bpe-Chr3:2142145 1.25E-17 dispersed
Bpe06g00253 Bpe-Chr6:13083731 Bpe03g00169 Bpe-Chr3:2142145 3.65E-25 dispersed
Bpe09g00259 Bpe-Chr9:1897092 Bpe03g00169 Bpe-Chr3:2142145 3.48E-44 dispersed
Bpe10g00132 Bpe-Chr10:2467445 Bpe03g00169 Bpe-Chr3:2142145 1.93E-22 dispersed
Bpe10g00218 Bpe-Chr10:8353632 Bpe03g00169 Bpe-Chr3:2142145 8.79E-26 dispersed
Bpe13g00430 Bpe-Chr13:11895853 Bpe03g00169 Bpe-Chr3:2142145 3.85E-22 dispersed
Bpe13g01427 Bpe-Chr13:19563870 Bpe03g00169 Bpe-Chr3:2142145 1.63E-45 dispersed
Bpe14g01098 Bpe-Chr14:8188222 Bpe03g00169 Bpe-Chr3:2142145 1.22E-13 dispersed
Bpe15g00327 Bpe-Chr15:14787304 Bpe03g00169 Bpe-Chr3:2142145 1.85E-29 dispersed
Bpe02g01666 Bpe-Chr2:19342722 Bpe03g00169 Bpe-Chr3:2142145 2.76E-99 transposed
Bpe13g00857 Bpe-Chr13:14764250 Bpe03g00169 Bpe-Chr3:2142145 4.11E-41 transposed
Bpe12g00368 Bpe-Chr12:8943900 Bpe03g00169 Bpe-Chr3:2142145 1.71E-108 wgd
Bpe03g00169 Bpe-Chr3:2142145 Bpe03g00246 Bpe-Chr3:3258785 2.40E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00169 Bpe_Chr03 FPKM 11.01195 12.379751 24.662798 26.955536 73.383713 65.345367 80.023651 49.278847 52.164371 56.497593