Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00175 ATGGTCGGCAGTTCGTTAGATTATTTCAAGGAGCAAGAGAAGAGTTGCAACATGAACTTGGTACTAGATGACGATATTCTTAGTTTTTTCGAAAGCTTAGAAGACGTCGGAGAATTTCCCAATATAGAGGACGACGCCATTGATGCGAGCTTTAAGGAATTGGAAAAAACAACGAGGCTAGCTTTTCATGAGAATCCAACTTCGTCTTGTAGGGTACAGAGGGTCAGTTTAGAGAGAGAAACTGAGTCCGAAACCTCGCTAAAAAGAAAGTGGTCAAGCTTAAACCAAACAAGAGAAAATCAACCTTCGTTTTCTCTGCCATTTTCTCGGGAAACAAACAAAAATGCAGAACAAAAGACATCCCACACGGCAGTGGAGAGGAACCGACGAAAGCAGATGAACGAGCATTTGTCTGTGTTGAAATTTCTCATGCCTTCTTTCTATCTCCAAAAGGGAGATCAAGCTTCCATTATAGGAGGTGTAGTGAGTTACATCAACGAGTTGCAGCATATTTTAAAAACGCTAGAGGGGAAGAAGAAGATAAAATTTTACAGTAATGAAGGTCTCTTAAACCCTAGTCCTAGAAACTCGCCATTGATAAGTCCAAGAACACCACAAAACATCAGTAGCTCGTATCAGCTTCCGAGGCTGAAAAAAGCTGTAGGCTTTATCCATTCTGATCCTTCCATTATTGCTAACCCACTTGACCCATCTCCTTCTTGTTCATCCTCTACGAATTCCTCCATTGTTGACAGCTTCGGCGAGCTTTTTGCGGCTAGCTCAAAGTCTGGTTTAGCTCAAGTTGAAGTGAGATTTACAGGTCCGAATTTGCTGTTGAAGACTGTTTCTTCTCCTTTTCCTGGTCAAGTTTTGAAGATAATGGACGCCATTGAAGATCTCGCGCTTGAAATTCTTCACTTGAACATCTCTACCAATGAAGGCGCCATGGTTAATACCTTCACCATCAAGATTGGAATTGAATGCAAAATTAGTGCTGAGGAACTCGCAATCAAAGTTCAGCAAACCTTCTGCTAA 1035 41.55 MVGSSLDYFKEQEKSCNMNLVLDDDILSFFESLEDVGEFPNIEDDAIDASFKELEKTTRLAFHENPTSSCRVQRVSLERETESETSLKRKWSSLNQTRENQPSFSLPFSRETNKNAEQKTSHTAVERNRRKQMNEHLSVLKFLMPSFYLQKGDQASIIGGVVSYINELQHILKTLEGKKKIKFYSNEGLLNPSPRNSPLISPRTPQNISSSYQLPRLKKAVGFIHSDPSIIANPLDPSPSCSSSTNSSIVDSFGELFAASSKSGLAQVEVRFTGPNLLLKTVSSPFPGQVLKIMDAIEDLALEILHLNISTNEGAMVNTFTIKIGIECKISAEELAIKVQQTFC 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2188247 2189554 + Bpe012021.1 Bpe03g00175 100680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00175 344 SMART finulus 123 174 IPR011598 GO:0046983
Bpe03g00175 344 Pfam Helix-loop-helix DNA-binding domain 118 169 IPR011598 GO:0046983
Bpe03g00175 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 184 IPR036638 GO:0046983
Bpe03g00175 344 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 4 344 - -
Bpe03g00175 344 Gene3D - 109 182 IPR036638 GO:0046983
Bpe03g00175 344 PANTHER TRANSCRIPTION FACTOR FAMA 4 344 IPR044283 GO:0003700|GO:0010052
Bpe03g00175 344 MobiDBLite consensus disorder prediction 99 126 - -
Bpe03g00175 344 MobiDBLite consensus disorder prediction 99 114 - -
Bpe03g00175 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 168 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00175 K20558 SPCH; transcription factor SPEECHLESS - rcu:8274388 260.381
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00175 Bpe12g00372 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00175 Bpe-Chr3:2188247 Bpe13g00621 Bpe-Chr13:13181067 1.28E-43 dispersed
Bpe12g00372 Bpe-Chr12:8995190 Bpe03g00175 Bpe-Chr3:2188247 4.51E-78 wgd
Bpe03g00175 Bpe-Chr3:2188247 Bpe03g00243 Bpe-Chr3:3223273 1.48E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g866 . . Bda05g00110 . Bpe03g00175 . Bma10g01285 . . Cmo18g01328 . . . . Sed07g0811 . Cpe14g00057 Bhi01g01450 Tan01g0149 Cmetu06g1760 . . Mch10g0088 . . . . . . . . Cone1ag0958 Cone5ag0651 Cone14ag0031 . . . . . Blo07g00350 Blo09g00040 . Bda15g00775 . Bpe12g00372 . . . . . Cma16g00072 Cma18g01299 Car16g00063 Car18g01215 Cpe09g00043 . . . . . . . . . . . . . . . . Csa03g02197 Chy06g01256 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016607 1 0 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21070 PF00010 HLH 1.60E-10 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00175 Bpe_Chr03 FPKM 55.850574 60.123661 31.532433 27.842323 34.638493 42.22863 31.527855 26.752573 26.781521 23.646257