Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00178 ATGATGAAAGCTGCAAATGGGAAAAAGCTTGTCATTTTTCTGGACTACGACGGAACCCTCTCCCCCATCGTCGATGACCCTCATCGTGCTTTCATGTCCGACGAGATGAGAGCTGCTGTCCGACAAGTTGCCAAGTGTTTTCCGACAGCGATTATCAGTGGAAGGAGCATCGACAAGGTGAAAGAGTTTGTACAGTTAGATAGTGTGTACTATGCTGGGAGCCATGGGATGGACATCATGGCCCCACCTCCAAAATCTTCTAAGCCATCTGATGGCAAGCATCCTTCCACCTACTTGAACCAAGAGGGCAATGGAGTGATGTTTCAACCTGCAAAGAAATTCTTGCCAGCAATGCAGGAGATCTACAAACTTTTGGAGGAAACCACCATGAAAATAGAAGGAGCCATGGTTGAAGACAATATATTCTGTGTCTCTGTCCATTTCAGACAAGTCAAGGAAGAGGACTATGGAAAATTGGAAGAGAAGGTGAAAGCAGTTGTTGAAAGATACCCAGAATTCAAGTTAAGCCAGGGGAAAAAGGTAATGGAAATAAGACCTGCAATAGAATGGGACAAAGGGCATGCCCTGGAATACTTTCTTCACACCTTAGGGTTAAGCAATTCGAGCGATCTCATTCCGTTGTATATAGGCGATGATCGAACCGACGAAGACGCCTTCAAGGTGATAAGAAGAAGAGAAAAAGGGTATCCAATAATAGTGACATCCAGGGCGAAGGAGACAAAGGCGTTGTTCTCATTGAAAGAACCTTCAGAAGTAATGACTTTCCTGTTGAGGTTGGCAAGGTGGAGGAAATCATCCTCTTCTTCAAATTCAACCAAATCACTTTCCCAAGTTTGGGGCATCGGCAATTGA 873 44.67 MMKAANGKKLVIFLDYDGTLSPIVDDPHRAFMSDEMRAAVRQVAKCFPTAIISGRSIDKVKEFVQLDSVYYAGSHGMDIMAPPPKSSKPSDGKHPSTYLNQEGNGVMFQPAKKFLPAMQEIYKLLEETTMKIEGAMVEDNIFCVSVHFRQVKEEDYGKLEEKVKAVVERYPEFKLSQGKKVMEIRPAIEWDKGHALEYFLHTLGLSNSSDLIPLYIGDDRTDEDAFKVIRRREKGYPIIVTSRAKETKALFSLKEPSEVMTFLLRLARWRKSSSSSNSTKSLSQVWGIGN 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2203508 2205583 - Bpe012024.1 Bpe03g00178 100683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00178 290 CDD HAD_TPP 11 260 - -
Bpe03g00178 290 TIGRFAM T6PP: trehalose-phosphatase 7 267 IPR003337 GO:0003824|GO:0005992
Bpe03g00178 290 Gene3D - 123 282 IPR023214 -
Bpe03g00178 290 Gene3D - 10 92 IPR023214 -
Bpe03g00178 290 SUPERFAMILY HAD-like 11 269 IPR036412 -
Bpe03g00178 290 Pfam Trehalose-phosphatase 13 257 IPR003337 GO:0003824|GO:0005992
Bpe03g00178 290 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 12 231 IPR006379 -
Bpe03g00178 290 MobiDBLite consensus disorder prediction 80 100 - -
Bpe03g00178 290 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 279 IPR044651 GO:0004805|GO:0005992
Bpe03g00178 290 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00178 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - rcu:8274378 403.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00178 Bpe-Chr3:2203508 Bpe15g00453 Bpe-Chr15:15960424 6.41E-106 dispersed
Bpe03g00178 Bpe-Chr3:2203508 Bpe03g00088 Bpe-Chr3:1376478 1.88E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00178 Bpe_Chr03 FPKM 14.874635 16.076361 9.213612 10.619538 20.341667 19.052559 20.462729 13.528644 13.14153 12.59105