Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00185 ATGTCCTCCACGCTGCTCGAGGTGACGCGCGCAGCGCATGAGGAGGTGGAGCGCTTGGAGCGAAACGTGGTGAAGGAGCTCCAGAATGAGCCTGCTTCTAGTCGGGATCGCTTGCTTCAGAGCCATCGAGTGCGGAGTATGATCGACGCTATCACTTCTACTACTGAGAAACTTGTTGAGATATATGAGGATAAAGATAATGCGAGAAAGGATGAGATAGGAGCCCTTGGGGGCCAAACTGCAACTGGAACCAACGTTTTTAGTGCATTTTATGATAGGTTGAAGGAGATTCGTGAGTACCACAGAAGGCATCCTGCTGCACGTGTTGTTGATTCAAATGACGACTATGAGATGCAACCTAAAGAGGAGCCACACATTGAATTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCATGAATTATACAACGAGTACATCAATTCTAAGTTCGGAGAGCCAATTGAGTATTCTGCTTACCTTGATTTGTTTTCTCAGCCACATAAGATTCCCCATAAACTAAAGTTAACCAAGAAATATAAAGATTATGTGGCGAATCTACTTGAGTATTTAATATACTTTTTCCACCGTACTGAGCCTTTGCAAGATCTTGATAAAATATTTTCCAAGGTCGAAACTGAATTTGATGAGCAGTGGGTGAATGGCACAGTGGAGGGGTGGGAGAGTGCTAGTCAAGAAAATGGAAAAATAGCTCAGCATACTGTTATTGATCTTGACTATTACAGCACGATCGACGAGCTGATTGAATTAGGTTCTGAAAAGCTGAAGGAGGCACTGGCTGCATTGGGACTGAAGACAGGTGGTACTGTCCAGCAGCGAGCAGAGAGGCTTTTCCTTACTAAGCATACAGCTCTTGAAATGTTGGATAAGAAACATTTTGCTAAAGTTCCCCGTGGTTCAGAACAAAATGGAGTTCCTGTGGCTTCACATTGTAACGAAAATTTGAAAGAAGTTGCCTTGATGGAAGCCAAAATTGAAAAACTAAGTGACTTATTGGATGAGACGATTGTGCGAACAAAAGACAACATCATGAAAAAGCAAGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAGGCTGACACAGATACTGATGATGAGGAGCAACAAATTTATAATCCTCTGAAACTTCCAATGGGTTGGGATGGGAAACCTATACCTTATTGGCTGTACAAACTTCACGGTCTTGGTCAGGAGTTTAAATGTGAGATATGTGGGAACTATAGCTACTGGGGGCGTAGAGCTTTTGAACGACACTTCAAAGAATGGCGTCACCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACGAAGAACTTCAATGAAGTGACATCAATTGAGGAAGCGAAAGAGTTGTGGAAGAAAATACAGGAGCGGCAGGGAGTGAACAAATGGCGGCCAGATCTTGAAGAAGAGTATGAAGATAAAGAGGGTAACATCTACAACAAGAAGACTTTTACTGATCTGCAGCGCCAGGGATTGATATGA 1527 43.29 MSSTLLEVTRAAHEEVERLERNVVKELQNEPASSRDRLLQSHRVRSMIDAITSTTEKLVEIYEDKDNARKDEIGALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARVVDSNDDYEMQPKEEPHIEFSGEEAFGRYLDLHELYNEYINSKFGEPIEYSAYLDLFSQPHKIPHKLKLTKKYKDYVANLLEYLIYFFHRTEPLQDLDKIFSKVETEFDEQWVNGTVEGWESASQENGKIAQHTVIDLDYYSTIDELIELGSEKLKEALAALGLKTGGTVQQRAERLFLTKHTALEMLDKKHFAKVPRGSEQNGVPVASHCNENLKEVALMEAKIEKLSDLLDETIVRTKDNIMKKQALTYEEIEAEREEEETQADTDTDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEVTSIEEAKELWKKIQERQGVNKWRPDLEEEYEDKEGNIYNKKTFTDLQRQGLI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2249140 2254448 + Bpe012031.1 Bpe03g00185 100690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00185 508 Coils Coil 352 379 - -
Bpe03g00185 508 MobiDBLite consensus disorder prediction 360 380 - -
Bpe03g00185 508 Coils Coil 9 29 - -
Bpe03g00185 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bpe03g00185 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Bpe03g00185 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
Bpe03g00185 508 MobiDBLite consensus disorder prediction 362 380 - -
Bpe03g00185 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 174 IPR031774 -
Bpe03g00185 508 Pfam Replication stress response SDE2 C-terminal 224 303 - -
Bpe03g00185 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Bpe03g00185 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00185 K12827 - zju:107414800 828.55