Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00186 ATGCCGAAGAGTTCGAGGCACAAGTCAAGCAAGCATGGTTCCAAGGATGTTAAGGATCACTCGGTCTCTGAAAACGATTCTACTTCTAAGGATAAGAGGAGCAGGGACGAAGTTGGTCTTAGGGTTGTAAAGGACTCGTCCTCCGCCGACAAGAGGAAGCTTTATTCCAAGGATGCAAAGGACAGCTATGTCGCTGGAAATGGACAACGTTTGGAGGAACGTGCCTCTTCAAAGCGCCGCAGGGAGAAAGGCGACGATGGAACTACTGATAGGTGGAATGGTGGCGACGACCATGATCTAGGTGAAGGGTTGAACCCTAAGCTTTCTTCAGATTTGAAAAACAAGAGGAAGGATGAGAATGTTGGATTTGTAGGTGATGGTGAGTGGGGAAAGAAGACTGCAGGGAAAGAAGGAAGGCATCGGGAATCAAGCAGGAAGGAGGCTAGGGAGGAAGGTGCTGAGAGGGAAAAGAAAGGAAGAAATGAGAGAACAGTTAACAGTGAAGACCATCGACCGACAAAACAAGTTGAAAATACTGCCTGTGTGCTTTATGCAGGATCAAAGAATCAGATTGAGGGTAATATTAGGAAACGACGAGATGGTTTGGGTGAGGGAAATAAATATCCTGATGATACAGCAGGTGTAAATGAAAGAAGTAGTAAGGATGATTCTGGGAAGGATGGGAGGCAGAAGAGTGAGAAAGTCAAGGATGATAAACACAAGGAGAAGTATTGTGATGATTTGGACAAGGAGGGCAAGAACCGAGATGGCAAGCAAAGAGACAAGCACATTGCGAAAAATCATGTCAGTAGTCGGTTTGATGATGAGCGATTGAAGGATGAAAAATGCGTTGGGGATATCCAACATCTGAAAAACAAGACTTGTGACGGTGACCGGGATCGAGATTATAACTGTAGTCGTGATTGGGATTTAGATTCCATTCGGGATCGGGATCGAGATCGAGATCGAGATCGAGATCGTGAACCAGATCGCCGACGTCGTGACCGTGATTATGATCGAGACAGTGATGGGGATCGAGATTGGGACCGGGACCGGGATCGGAATCGAAATCGGGGTCAAGATCTAGAGCGGGATCGTGGACATGATCACGTGGACTATGATGAATCCACCGTTGAATATCGAAGTAGTAAATACAGGAGTCGAGAAAAGAAAAGATCTTCAGATGGTTGTGATGATTATCCTGATGTTAAATCAACAAGTGTTAGAGTCCATGGTACTGTTGTGGATGTGGAAAAGAAATCATCTAGCATTGATAGAGTTGATTATGATGCTAAGACAGGAGGATCTCAAGCGCACTCAACTCATTCAGATGCATTGATTTCCAATAACAGGCGAAGGAATTCCCCTGGGTCTATTTCATTTGTTAATGCAGATGAATACAGGTTTAGTGTGATTTTATCATTGAAATATAATTTACTGCTGCATTTCAGTCACCCCGAATCAGAAGATATGAAATATCGAGACTCTTTGCAAGAACAGGCTTCAAAAGCAAACTATTCAAGGGAACTCACTGGTTCTTCAGGACCTCTTGAGAAGGGCTCTAAGTACAGGTCCATGGAGAAACTTACTAAAACAGATGGCGGATATTTCGGCGAGCCTTTCAATGAGAGGTCATCGAGTTCAAAAGCCCTTGACATTGAAGAAACTGGACGAAGGAGTGCGTCTATTGACATGAGAGAATTTTCTAATGTTGAGGATAGAGTCAACTGGGATTTGGCTATGGAGAAACCTCTTGTGGATGAATCATCCTTTTATAGAGTTGGTCTAGGCGGCTCATCTCCGTTGGGCCCTTCTGCTTTTAGGAGTGGAGTTGATAGCCCATCTTTTGCTAATTCAGTGGAAGATAACTTCAAAGCCAATTCCGCAGGTCGCTACAAGAGGAATAGTGACCCCAACTCAGGGAGAATGCATGGAAATGCTTGGAGGGGTGTTGCAAACTGGACAGCACCTATGCCAAATGGCTTTATTCCTTTTCAACATGGGCCTTCTCATGGAGGATTTCAGCCAATGGTGCCTCAGTTTCCTGCGCCACCTCTCTTTGTTAGACCTTTGGAAATTAATCACTCTGGGATGCCTTATCATATTTCTGATGTCGAAAGGTTTTCAAATCCATTTCACCAGTTGGGATGGCCCAATGTTTTGGATGGCTCTGGTCCTTCAAATTTGCATGGTTGGGACAGGAGTAGTGGTGTTTTCAGGGATGAGCCCCTAGTTTATAGGAGGGCTGAGTGGGACCAGAATGGGCGAGGATGGGAGTCTGGCGCTGTGTGGAAAGGACAAAATGGAGACTTAATAACAGGCTTGGCCTCTCCATCTGACAAGGATCATCATGGAGTACAGGCACATTGCGATGCCGGGCCAGTCAATGACGGGTCTCATCCTGAGGATAGTTCTCAGCCTACAGATTTTACTTCGAATGCTGCTACTCCCGTGAAAGAAAGTTCTTCCCCTCTGCCAGAACCTGTGTCTGAGAAGGCACTTTCTCCAAAAACATCAAGGACAAATAGTTCTTTCTTAAGTCGTATTTATCTTTCTAAGATTGAAATTTCAGCCGATCTTACAAGTCCAGAGTTGTATAACCAATGTATGAATCTACTGGAAACTGAACAGTGTTTGATTCCTGATGACTTTTCTAGTCTTAAACTGTTCAAGGTACAGATTCTTGATAGAAGTTAA 2697 44.53 MPKSSRHKSSKHGSKDVKDHSVSENDSTSKDKRSRDEVGLRVVKDSSSADKRKLYSKDAKDSYVAGNGQRLEERASSKRRREKGDDGTTDRWNGGDDHDLGEGLNPKLSSDLKNKRKDENVGFVGDGEWGKKTAGKEGRHRESSRKEAREEGAEREKKGRNERTVNSEDHRPTKQVENTACVLYAGSKNQIEGNIRKRRDGLGEGNKYPDDTAGVNERSSKDDSGKDGRQKSEKVKDDKHKEKYCDDLDKEGKNRDGKQRDKHIAKNHVSSRFDDERLKDEKCVGDIQHLKNKTCDGDRDRDYNCSRDWDLDSIRDRDRDRDRDRDREPDRRRRDRDYDRDSDGDRDWDRDRDRNRNRGQDLERDRGHDHVDYDESTVEYRSSKYRSREKKRSSDGCDDYPDVKSTSVRVHGTVVDVEKKSSSIDRVDYDAKTGGSQAHSTHSDALISNNRRRNSPGSISFVNADEYRFSVILSLKYNLLLHFSHPESEDMKYRDSLQEQASKANYSRELTGSSGPLEKGSKYRSMEKLTKTDGGYFGEPFNERSSSSKALDIEETGRRSASIDMREFSNVEDRVNWDLAMEKPLVDESSFYRVGLGGSSPLGPSAFRSGVDSPSFANSVEDNFKANSAGRYKRNSDPNSGRMHGNAWRGVANWTAPMPNGFIPFQHGPSHGGFQPMVPQFPAPPLFVRPLEINHSGMPYHISDVERFSNPFHQLGWPNVLDGSGPSNLHGWDRSSGVFRDEPLVYRRAEWDQNGRGWESGAVWKGQNGDLITGLASPSDKDHHGVQAHCDAGPVNDGSHPEDSSQPTDFTSNAATPVKESSSPLPEPVSEKALSPKTSRTNSSFLSRIYLSKIEISADLTSPELYNQCMNLLETEQCLIPDDFSSLKLFKVQILDRS 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2255031 2259475 + Bpe012032.1 Bpe03g00186 100691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00186 898 MobiDBLite consensus disorder prediction 773 839 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 1 404 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 498 514 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 434 458 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 799 820 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 72 175 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 490 524 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 431 458 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 12 59 - -
Bpe03g00186 898 PANTHER OS05G0595500 PROTEIN 321 883 - -
Bpe03g00186 898 PANTHER OS05G0595500 PROTEIN 1 310 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 214 404 - -
Bpe03g00186 898 MobiDBLite consensus disorder prediction 192 206 - -
Bpe03g00186 898 PANTHER LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN 321 883 - -
Bpe03g00186 898 PANTHER LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN 1 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00186 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 - zju:107414603 684.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00186 Bpe-Chr3:2255031 Bpe03g00238 Bpe-Chr3:3165349 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g911 . . . . Bpe03g00186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g02021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004460 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00186 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe03g00186 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe03g00186 Bpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.371882 0.154544 0.357614 0.195105 0.082673 0.174205