Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00188 ATGGGCTATGGAAAGCTGAAGCCGTCTGACCCAGGAGGGTCACCCATCAATCAATCTGAACCCCCTCCCTCCTACCCTCCTCCTCCACCACGTAGCTGGAGGACGAAGCTACTCTTTTTCTCCTTTCTCTCTGTTATTCTACTCATCGCCGCCGTCGTCTCCGCCGTTCTCCTCGTCGGTCTTCGAACTCAGTCTTCGCGTCAACCCGACATCAATTTCCCTCGTAAACCGACGCAGGCTATTTCTCGGACCTGCAGCCGAACCCGGTTCCCGACTCTTTGTGTCAACTCACTAGTCGCCTTCCCCGGCTCTGCGAGCGCCACTGAGGACGACCTCGTCCACATTTCCTTCAACATGACGCTGCAGCATTTCTCCAGGGCTCTCTACCTCTTCACCGGAATCTCCAATTTTCCGATGAATTCCCTCGTCCGATCTGCCTACGAAGATTGCCTGGAGCTCCTCGAAGATTCGATCGACGCGATGGCTCGCTCATTGTTCTCCGTCTCACCACTTCCGGGCGAGGACACTCAAACTGTTGGCTCCACTCACGACATCCTCACTTGGCTCAGCGCCGCACTGACCAACCAAGACACCTGCATGGAAGGATTCGAAGTTGTTAGCGGAACTGTCAAGAATCAAATGACTGAGGGTCTTCGCGATTTGTCGGAGCTAGTAAGCAACTGCCTGGCCATTTTTTCCGGCACCGACTCCAGCGATTTTTCCGGCGTGCCTATTCAGAACAGGCGGAGGCTAATGGAGGCCGCGGATACATTGGACGAAAAGGAGAAACAATCGGAGGAATTTCCGAGATGGATGAGTCGGGAAGAGAGAGAATTGCTGAGTTTGCCGGCTTCGGCGATTCAAGCAGACATTATAGTGTCCAAGGATGGAAACGGAACTTGCAAAACACTAACGGAGGCGATCAAGAAGGTGCCCGAGCACAGCGATCGCCGAACGATAATCTACGTGATGGCAGGAAGGTACGAAGAAGATAACTTAAAGGTGGGAAGGAAAAAGACGAACGTGATGTTCATCGGAGATGGGAAGGGCAAAACGGTCATATCGGGTGGCAAAAGTGTTTACGATGAGCTGACGACATTTCACACTGCCACCTTTGCCGCGACGGGAGCAGGAGTGATATTACGAGACATTACGATTGAGAATTACGCCGGACCAAGCAAGCACCAGGCGGTGGCTCTCCGGATCGGAGCTGACCATGCCGTCGTCTATAGATGCAACGTCATAGGCTACCAAGACACCCTCTATGTGCACTCAAATCGGCAATTCTTTCGAGAATGCGACATATACGGAACTGTAGATTTCATTTTCGGCAACGCTGCTGTAGTATTTCAAAATTGTAGTCTTTACTCCCGGAAGCCAATGCCCCTACAAAAGAACACCATCACAGCCCAAAACCGAAAGGATCCAAACCAAAACTCGGGCATTTCAATCCATGCTTGTCGGATTATGGCCACCTCTGATCTTGAGCAGGCGAAGAGTAGCTTACCGACATATCTCGGTCGACCATGGAAACTATTCTCGAGGACGGTGTACATGTTATCATACATAGGGGATCATGTACATCCTAGAGGATGGCTTGAATGGAATGCGACATTTGCATTAGACACGTTATACTACGGGGAATACATGAACTACGGTCCTGGTGGAGCAGTGGGTCAACGGGTTGGTTGGCCCGGGTATCGAGTCATTACATCGACCATAGAGGCAAGTAAGTTCACGGTAGCTCAATTTATATACGGGTCATCGTGGCTACCGTCGACCGGAGTTGCTTTCTTGGCCGGATTATCAGAATAA 1815 51.24 MGYGKLKPSDPGGSPINQSEPPPSYPPPPPRSWRTKLLFFSFLSVILLIAAVVSAVLLVGLRTQSSRQPDINFPRKPTQAISRTCSRTRFPTLCVNSLVAFPGSASATEDDLVHISFNMTLQHFSRALYLFTGISNFPMNSLVRSAYEDCLELLEDSIDAMARSLFSVSPLPGEDTQTVGSTHDILTWLSAALTNQDTCMEGFEVVSGTVKNQMTEGLRDLSELVSNCLAIFSGTDSSDFSGVPIQNRRRLMEAADTLDEKEKQSEEFPRWMSREERELLSLPASAIQADIIVSKDGNGTCKTLTEAIKKVPEHSDRRTIIYVMAGRYEEDNLKVGRKKTNVMFIGDGKGKTVISGGKSVYDELTTFHTATFAATGAGVILRDITIENYAGPSKHQAVALRIGADHAVVYRCNVIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSLYSRKPMPLQKNTITAQNRKDPNQNSGISIHACRIMATSDLEQAKSSLPTYLGRPWKLFSRTVYMLSYIGDHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVGWPGYRVITSTIEASKFTVAQFIYGSSWLPSTGVAFLAGLSE 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2281330 2283423 + Bpe012034.1 Bpe03g00188 100693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00188 604 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Bpe03g00188 604 Pfam Pectinesterase 290 587 IPR000070 GO:0030599|GO:0042545
Bpe03g00188 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 78 234 IPR035513 -
Bpe03g00188 604 Gene3D - 284 602 IPR012334 -
Bpe03g00188 604 SUPERFAMILY Pectin lyase-like 285 601 IPR011050 -
Bpe03g00188 604 MobiDBLite consensus disorder prediction 1 28 - -
Bpe03g00188 604 SMART PMEI_2 76 231 IPR006501 GO:0004857
Bpe03g00188 604 PANTHER PECTINESTERASE 29 602 - -
Bpe03g00188 604 Pfam Plant invertase/pectin methylesterase inhibitor 80 231 IPR006501 GO:0004857
Bpe03g00188 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 233 IPR035513 -
Bpe03g00188 604 PANTHER PECTINESTERASE 29 602 - -
Bpe03g00188 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 49 233 IPR006501 GO:0004857
Bpe03g00188 604 CDD PMEI-like_3 85 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00188 Bpe-Chr3:2281330 Bpe03g00695 Bpe-Chr3:27078457 5.11E-149 dispersed
Bpe08g00556 Bpe-Chr8:3879095 Bpe03g00188 Bpe-Chr3:2281330 8.75E-119 dispersed
Bpe13g01298 Bpe-Chr13:18131672 Bpe03g00188 Bpe-Chr3:2281330 3.13E-123 dispersed
Bpe12g00391 Bpe-Chr12:9331378 Bpe03g00188 Bpe-Chr3:2281330 9.70E-117 wgd
Bpe03g00188 Bpe-Chr3:2281330 Bpe03g00235 Bpe-Chr3:3128996 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00188 - - zju:107414790 881.708