Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00197 ATGATGGATGGCATCAGTGACGACGAAGAATCCCAGTTTTTCGATGCCCCAGAGGATGTTACTTCAATATCTGATGGAAGTTGTGATGACAGAGGGATTCTTCGTTATAATTCTAGTTTAAAGGATCGTTTTCAGTGTGGTTTCCTGTATGATGTTTGGAGCAGGAGCCCCCAGAGCGTTGAAGAGCGCCGTCGAAGGTTTTTGCAATGGATGAGATCGAATTTGGATCAAATTGCTTTTGATCATTCCGATGATTTATGTGGTGATATGATGGGGGAACAAAACGAAAGAGTTGGGGAGAGCAATAGGGCTGCAGATGAGTTCTTTTCTACTGATAATTTTGATTCTGCAGAGCAGAAAGGTTCGGTTGAGAATGTTGTTTGCACAGATGAAAGAATCTTCGCTAACACAGATAAGATGAAGCCGAACAAGAGGAGCGTTGAGTTGAAAGAAGTTCAATTAGGGATGGGTGAAGAGTGTGATACAAGTTCCAGTTCATTTTCCTCCGTTCAAATGATGAAGACCGGTGTTCGAAGGAGAAACAGTCTAGGGGATTACACAAAGATACACAAGAAGAATTGGCTGCAAAAGTTGCGCTCTTTAGCATGCGTTGTTGGTGTGAACGGTGAAGATTGTCCATCAGGATCGGATAAAGATGAACTCCTGAGGCCCAAATTTCAAAGAATTAAGGTCAATCAGTTCAAGAAGCAGTCGAAGGAGCTTTCTGCTCTTTATATGGGGCAAGATATCCATGCTCATGATGGTGCAATTTTGGCTATGAAATTCAGCCCTGATGGGCAATATCTGGCAAGTGGTGGAGAGGATGGAATTGTTAGATTGTGGCAAGTAGTGGAGGACGAGAGATCTAATGATACAGATATTCCAGAAATCAATCCATCTTGCATATACTTCATAGTGAACCATCTATCTGAATTGAAACCTCTATTTGAGGATAAAGAAAACACAAGTTATAGATCAATAAGCCTGAAGAAGACATCAGAATCAGCTTGTGTCATATTCCCTCCTAAAGTCTTCCGTATAGTGGAAAAGCCCTTGCGAGATTATTGTGGACATAAGGACGAGATCTCCGATCTATCGTGGTCTAAGAACAATTATCTTATTTCCTCATCAGTTGACAAAACCGTCCGCTTATGGCACATAGGACATAACAATTGCATAAAAGTTTTTTCCCACAGTGACTATGTAACATGCGTTCAATTTAATCCCGTGGATGATAATCACTTTATTAGCGGGTCAGTAGATGGAAAAGTTCGCATTTGGAGAATATCCTCCAGTCAAGTTGTTGATTGGACTGATATTAGAGAAATAGTTACTGCAGTGTCTTATCGGCCGGATGGAGAGGGAGGAATTGTTGGATCAATGACGGGTGACTGTCGATTTTACAACATATCAGATAATCACATGCAGTTGGATGCTCAAATATCCTTCAATAGTAAGAAAAAGTCTAACCAAATGCAGTTAGATGCTCAAATACCCTTCAATAGTAAGAAAAAGTCTGCTGGCAGGAAGATAACAGGCTTTCAGTTCTTTCCTCAAGATTCGAGCAAAGTAGTGGTGACTTGTGCTGATTCTTATGTCAGAATTCTTCATGGATCTGATGTGATCGGAAAATACAAGGGATTTCACAATGCTGGAAACCAGGTTCCTGCCTCTTTCACGTCTGATGGAAAGTATATTGTGTCGGCTTGTGGGGATTCTAATGTATATCTGTGGAACTCAGGTAGCCTCTCTCACGCCAAAAAAAATAAATCTTATGAGCATTTCTCAACCAATGCCTCTGTTGCGGTGCCTTGGAGTGGTTTCAGTTATGGTAACACAGAGAATGGATGCCAATATTATGCACTAGAGAAGATTGCATCTGAAAATCTCTCTCTCTCTTCCTCGCCTGCTAGTTTCATGTTGAGTAAGGAGTATTTCTTGGAGACTTTTCCGAAAGGATCGACACTTTGGCCCGAAGAGAAACTACCTGAATCTAGCCTGCATTTCAAGCAGTTGAGAATGCATAAATCTGAGTACAAGTTTCTCAAAGCTTCCTGCCAGAAGACATCAAATTCCAACGCATGGGGCATGGTTATTGTTACCGCAGGCTGGGATGGACGGATCAAGTCATTTCATAATTATGGATTACCCGTACCAGTTTGA 2163 41.38 MMDGISDDEESQFFDAPEDVTSISDGSCDDRGILRYNSSLKDRFQCGFLYDVWSRSPQSVEERRRRFLQWMRSNLDQIAFDHSDDLCGDMMGEQNERVGESNRAADEFFSTDNFDSAEQKGSVENVVCTDERIFANTDKMKPNKRSVELKEVQLGMGEECDTSSSSFSSVQMMKTGVRRRNSLGDYTKIHKKNWLQKLRSLACVVGVNGEDCPSGSDKDELLRPKFQRIKVNQFKKQSKELSALYMGQDIHAHDGAILAMKFSPDGQYLASGGEDGIVRLWQVVEDERSNDTDIPEINPSCIYFIVNHLSELKPLFEDKENTSYRSISLKKTSESACVIFPPKVFRIVEKPLRDYCGHKDEISDLSWSKNNYLISSSVDKTVRLWHIGHNNCIKVFSHSDYVTCVQFNPVDDNHFISGSVDGKVRIWRISSSQVVDWTDIREIVTAVSYRPDGEGGIVGSMTGDCRFYNISDNHMQLDAQISFNSKKKSNQMQLDAQIPFNSKKKSAGRKITGFQFFPQDSSKVVVTCADSYVRILHGSDVIGKYKGFHNAGNQVPASFTSDGKYIVSACGDSNVYLWNSGSLSHAKKNKSYEHFSTNASVAVPWSGFSYGNTENGCQYYALEKIASENLSLSSSPASFMLSKEYFLETFPKGSTLWPEEKLPESSLHFKQLRMHKSEYKFLKASCQKTSNSNAWGMVIVTAGWDGRIKSFHNYGLPVPV 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2329303 2332203 - Bpe012044.1 Bpe03g00197 100702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00197 720 SUPERFAMILY WD40 repeat-like 249 709 IPR036322 GO:0005515
Bpe03g00197 720 MobiDBLite consensus disorder prediction 1 15 - -
Bpe03g00197 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 395 IPR001680 GO:0005515
Bpe03g00197 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 283 - -
Bpe03g00197 720 Gene3D - 233 606 IPR015943 GO:0005515
Bpe03g00197 720 Pfam WD domain, G-beta repeat 391 427 IPR001680 GO:0005515
Bpe03g00197 720 Pfam WD domain, G-beta repeat 251 281 IPR001680 GO:0005515
Bpe03g00197 720 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Bpe03g00197 720 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Bpe03g00197 720 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Bpe03g00197 720 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Bpe03g00197 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 387 - -
Bpe03g00197 720 SMART WD40_4 389 428 IPR001680 GO:0005515
Bpe03g00197 720 SMART WD40_4 348 386 IPR001680 GO:0005515
Bpe03g00197 720 SMART WD40_4 430 469 IPR001680 GO:0005515
Bpe03g00197 720 SMART WD40_4 501 537 IPR001680 GO:0005515
Bpe03g00197 720 SMART WD40_4 538 579 IPR001680 GO:0005515
Bpe03g00197 720 SMART WD40_4 243 282 IPR001680 GO:0005515
Bpe03g00197 720 MobiDBLite consensus disorder prediction 1 21 - -
Bpe03g00197 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 433 - -
Bpe03g00197 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 437 IPR001680 GO:0005515
Bpe03g00197 720 PANTHER WD REPEAT DOMAIN 44 5 490 IPR040324 -
Bpe03g00197 720 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 490 - -
Bpe03g00197 720 PANTHER WD REPEAT DOMAIN 44 489 720 IPR040324 -
Bpe03g00197 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Bpe03g00197 720 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 489 720 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00197 - - - qsu:112008846 789.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00197 Bpe12g00345 CCT
Bpe03g00197 Bpe12g00345 ECH
Bpe03g00197 Bpe07g01024 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00197 Bpe-Chr3:2329303 Bpe12g00345 Bpe-Chr12:8523026 0 dispersed
Bpe03g00197 Bpe-Chr3:2329303 Bpe06g00273 Bpe-Chr6:13662358 5.59E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00197 Bpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0