Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00205 AGTGACGAACGTGCTTCCGATGCGCAGCATAGACGTGCCATTGCAGTAGCCATGGCCACCGCAGCAGCAGCTCAGGCGGCGGTGGCAACGGCCCAAGCAGCCATGGAGATGTTTAGACTTTCCAGGTCTTCCCTTCTCGTCAGAGAGCACTCGGCTGCGGTTCTCATTCAAAAAACCTTCAGAGGCTATCTGGCGAGAAGAGCTCTCCAGGCGCTGAAAGGAATTGTGAAGTTGCAAGCTTTAGTGAGAGGATACAACGTTCGAAAGAGAGCCAAAATGGCTCTCCAATGCATGGAAGCTCTGGTACGAGTTCAAGCCAGAGTCCTCCAGCAACGTACAAACAGGATCTCACGTGAAGATTCTGCATGTTTTAGCGATCACAGCAGCCAGAGGGGATCCCGTTTCGCAGAATCTAGAGAAGAAAGCAGCGCCCCTGAAGAGTCGCTCGAGCTGATGGGTATACAACTCATGGCCAGACAAAATTCTCTTTCTGACGCCTTCTCGCAACAGATATGGAAGAGTGGAGGAAAGGGAAGAGAGAGGGCGGATAAATCAAGATCGGCGTGGGAGAGCAAGGGCAGAAGATATTCATGCGATAAAAGAGACCCCATTAAAATAGTTGAGATGGATACTTCGTCTCACCCTTACTCTCCCTCACCCCACCATAACCAGAAATCACAGAAGCAACACCATCAATCTCCAGTAAACAGAACCCACACTCTGTTGTCGCTTCAATCCAACACCTCATCGCCATCCAAAACCAAAAATCTGCAAATCCACTCGGCAAGCCCGCGCTGCATGAGAGAAGAGAGAAGCCATCCAAATCCAAACTACATGTCGACCACGGCATCATCTGATGCTAGGTTCCGATCCATGAGTGCACCGAGGCAAAGGACTTGTACCCCAGAGAGGGAGAAGAGCTGCTCTGCCCAAAAACGCTTGACCTTCCCAGTTCCAGAGCCCATTGCTGCTGATAGATTTGAAATGAAGCCAACGTCGACGTCTTCTTGCTGCACAGACAGCCTTGTCGACGATGATATCTCGCTATCTTCACAGAGTGATCTCAGGGCGTGGTTTAGGCATTTGTAA 1089 50.6 SDERASDAQHRRAIAVAMATAAAAQAAVATAQAAMEMFRLSRSSLLVREHSAAVLIQKTFRGYLARRALQALKGIVKLQALVRGYNVRKRAKMALQCMEALVRVQARVLQQRTNRISREDSACFSDHSSQRGSRFAESREESSAPEESLELMGIQLMARQNSLSDAFSQQIWKSGGKGRERADKSRSAWESKGRRYSCDKRDPIKIVEMDTSSHPYSPSPHHNQKSQKQHHQSPVNRTHTLLSLQSNTSSPSKTKNLQIHSASPRCMREERSHPNPNYMSTTASSDARFRSMSAPRQRTCTPEREKSCSAQKRLTFPVPEPIAADRFEMKPTSTSSCCTDSLVDDDISLSSQSDLRAWFRHL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2449734 2451058 + Bpe012052.1 Bpe03g00205 100710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00205 362 MobiDBLite consensus disorder prediction 274 298 - -
Bpe03g00205 362 MobiDBLite consensus disorder prediction 132 146 - -
Bpe03g00205 362 Pfam IQ calmodulin-binding motif 50 69 IPR000048 GO:0005515
Bpe03g00205 362 Pfam IQ calmodulin-binding motif 73 92 IPR000048 GO:0005515
Bpe03g00205 362 PANTHER IQ-DOMAIN 5-RELATED 184 324 - -
Bpe03g00205 362 MobiDBLite consensus disorder prediction 171 310 - -
Bpe03g00205 362 ProSiteProfiles IQ motif profile. 73 100 IPR000048 GO:0005515
Bpe03g00205 362 MobiDBLite consensus disorder prediction 212 261 - -
Bpe03g00205 362 PANTHER IQ-DOMAIN 5-RELATED 8 140 - -
Bpe03g00205 362 MobiDBLite consensus disorder prediction 176 208 - -
Bpe03g00205 362 Gene3D - 47 100 - -
Bpe03g00205 362 SMART iq_5 71 92 IPR000048 GO:0005515
Bpe03g00205 362 SMART iq_5 48 70 IPR000048 GO:0005515
Bpe03g00205 362 MobiDBLite consensus disorder prediction 119 148 - -
Bpe03g00205 362 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 8 140 - -
Bpe03g00205 362 ProSiteProfiles IQ motif profile. 49 77 IPR000048 GO:0005515
Bpe03g00205 362 Pfam Protein of unknown function (DUF4005) 232 322 IPR025064 -
Bpe03g00205 362 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 184 324 - -
Bpe03g00205 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 92 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00205 - - - tcc:18605847 267.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00205 Bpe-Chr3:2449734 Bpe14g00783 Bpe-Chr14:5953139 1.20E-62 dispersed
Bpe03g00205 Bpe-Chr3:2449734 Bpe08g00502 Bpe-Chr8:3310062 1.81E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g977 . . . Bda07g01956 Bpe03g00205 . . Bma14g02027 . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0723 . . . . . . . Blo09g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00205 Bpe_Chr03 FPKM 4.628876 4.684026 11.943524 12.397487 64.211853 61.888523 61.122147 20.428593 18.897173 19.302416