Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00223 ATGTCTCAAGTCTTCATCTCCTCTCCCAAACATTGCGCCAAGCGAGGGTTCCACGTCAACAACCTCTTCAAAAAGATCTTCTGCTTATTTTCGGGAGCCTTCACCTTAATTCTCTCCCTCGTATTACTTGTCTGGCTCATCTTAAGGCCAACGAAGCCTGAGTTCTCCCTCAAAGAGGCTGACGTTTACCAGCTCAATCTCTCGGCCCCTCATCTTCTCGATTCCTCCATTCAGTTCACTTTGCTTTCAAAGAACCCAAACCAGAAAGTTGGCATTTACTACGACGAGCTTCATGTCTATGCCGCTTACAAGGGCGAAAGGATCACCCTCACCACCTCTGTTCCTCCTTTCTACCAAGGCCACCAAGACAGAAATATGTTATCTGCTTCGTTGGTTGGAGCAGGGGTGCCTGTATCTCCATCTTTTGGCTATGAAGTGGGGCGTGCTCAGACTGCCGGAACCCTTGTTTTGAACCTCAAAGTTGACGGGAGGCTTCGTTGGAAGGTCGGGACTTGGGTGTCAGGGCGTTACCGATTTGCCGTCGACTGTGCTGTGGCTTTGCCCTTTGGACCAGCTTTTCCTACAGGACTTCTTTCTTCCAAGCAGGGAACCCAATGTTCCACTGCCATTTGA 633 49.76 MSQVFISSPKHCAKRGFHVNNLFKKIFCLFSGAFTLILSLVLLVWLILRPTKPEFSLKEADVYQLNLSAPHLLDSSIQFTLLSKNPNQKVGIYYDELHVYAAYKGERITLTTSVPPFYQGHQDRNMLSASLVGAGVPVSPSFGYEVGRAQTAGTLVLNLKVDGRLRWKVGTWVSGRYRFAVDCAVALPFGPAFPTGLLSSKQGTQCSTAI 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2925854 2926486 - Bpe012078.1 Bpe03g00223 100728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00223 210 PANTHER NDR1/HIN1-LIKE PROTEIN 26 24 209 - -
Bpe03g00223 210 Pfam Late embryogenesis abundant protein 80 183 IPR004864 -
Bpe03g00223 210 PANTHER OS05G0367900 PROTEIN 24 209 IPR044839 GO:0098542
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00223 - - - mnt:21386786 319.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00707 Bpe-Chr2:4852418 Bpe03g00223 Bpe-Chr3:2925854 1.36E-22 dispersed
Bpe03g00223 Bpe-Chr3:2925854 Bpe04g00625 Bpe-Chr4:3994809 9.25E-53 dispersed
Bpe11g00835 Bpe-Chr11:6210681 Bpe03g00223 Bpe-Chr3:2925854 4.19E-19 dispersed
Bpe11g01806 Bpe-Chr11:14446331 Bpe03g00223 Bpe-Chr3:2925854 7.65E-06 dispersed
Bpe12g00746 Bpe-Chr12:12982573 Bpe03g00223 Bpe-Chr3:2925854 4.92E-10 dispersed
Bpe15g00040 Bpe-Chr15:4333300 Bpe03g00223 Bpe-Chr3:2925854 5.34E-11 dispersed
Bpe03g00223 Bpe-Chr3:2925854 Bpe02g00709 Bpe-Chr2:4870267 8.56E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g961 . . Bda05g00143 Bda07g01959 Bpe03g00223 . Bma10g01321 Bma14g02030 . . . Cma15g00995 Car02g00951 . . Cpe05g00576 . . . . . . . . Cla01g00007 Cam01g0007 Cec01g0006 Cco01g0008 Clacu01g0008 Cmu01g0008 Cre09g2497 Cone1ag1021 Cone5ag0728 . . . Csa05g00009 Chy09g01471 . Blo07g00314 . . . . . . . . Cmo02g01182 Cmo15g01055 . . . . . Cpe13g00339 Bhi12g00702 . . . Hepe06g0835 . . . . . . . . . . . . Cme09g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011546 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 0 1 1 3 1 0 1 0 1 3 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00223 Bpe_Chr03 FPKM 3.203413 3.412704 3.081917 2.760969 4.613372 4.852204 5.954258 1.423191 1.442999 1.795401