Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00230 ATGGAGAGATCGAGATCCAAGCGGAACTACTACTATGAGCCCCAGGACTATGATTCCGACACTGTTCCAAGAACCAGAGCTAGATACAACAACACTCATTACCCGCCTAGTAATCATCGTCACCGTGGCAATGCTGCGCGACCCTCCAAACCTCCTCAAGACCAATCTCCGGTCCTTACCACCACCTACCGGATACTCTGCCACGACATGAAGGTCGGTGGGGTGATTGGTAAGTCCGGAAGCATTATCAAGTCAATTAGGCAACATACTGGCGCCTGGATTAACGTCCACGAACTCGTTCCTGGCGATGACGAGCGAATCATCGAAATTACAGACACTCGACGTCGTGATCCTGATGGTCGATTACCCTCCTTCTCCCCCGCCCAAGAGGCTCTCATTATGATTCATGAGAGGACGCTGGAGGGTGACGTTGGAGCTGGGTTCAGTGGCACTAAGTACGACACTGGTGATGAAGAAGACGAGTATGGCGCAGTTAGAGGTGGTGGCGGAAATCGAGTTGCTACCAGGATGGTGGTGTCGAGAATGCACGTTGGCTGTTTGTTGGGAAAGGGAGGGAAGATTATCGAACAAATGCGGAATGAAACCAAGACTCAAATTAGAGTTCTACCTAGAGATCACAATATTCCTCGTTGCGTTTCCATGTCTGAGGAGATCGTTCAGGTTGTTGGTGATCCAAATGCTGTAAAGAATGCTGTAGCTATTATTGCCTCACGCCTACGGGAGAGTCAGCATCGCGACAGGAGTCATTTCCATGGGCGAATACAATCACCTGAACGGTTTTATTCTCCAGAAGATGATTATATGCCACCTGCAACTAATGTAGCACGTCGCGCATCCATGGATGGGGCATCAGTGAGGTCACGTTTATCCACTAACAATAGCAGAGGCAGTAATTACACAGCACGTTCATATATGAGTGACACTGGAGCTTCTCCTATGGTCGATAACATGCAGCCTTTATACAGTGACGAACTCATTGTGTTTCGAATGCTCTGTCCAACTGACAGAGTTGAAAGTGTTGTTGGAGAATCAGATGGATTTGTTGAACTTCTGCAAAATGAAGTTGGCGTTGATGTCAAAGTTTCTGACGCCATAGCTGGTTCAGAAGAGCAGATTATTGTCATTTCCTCTGAGGAGGGTCCAGACGATGATCTTTTTCCAGCTCAGGAAGCTTTGTTGCACATCCAAACTCGTATAGTTGATATTATTCCGGACAAAGAAAATATTGTAACTACTAGATTAGTTGTTTCATCCAGTGATATTGGCTGCTTAGAGGGTAGAAGTGGATCTTTACTTGAGATGAAGAAAATGACTGGAGCAGATATACAAATACTGCCCAGGGAAGAACTTCCAGCATGTGTTGCCTCAACAGATGAACTTGTCCAGATTATAGGAGAGATTAAAGCTGCTCGTGATGCTCTTGTTGAAGTGACATCAAGATTGCGAAGTTATATATACAGGGAGTTGTTTCAAAAAGACGTCGTAGGAAAGGAGACATTATCTCCAAATAACAATGCCGGAACTCGTCAAGTTCATAGTGGCAATGATTCTCAGAATGCGCCTCACCTGAATGTGCAACCATTGCCATCTACGCTACCAATAAAGGCAATTGGATATTCTGTCGCCGAGCTGACAAAGCAGAGTGAGAGTGACCATACCCAAGATGTGCCAAGTAGTTTAAACCGGATCCCTGTACCTCTTGTGACTAGGAGCACAATTGAAGTAGTCATACCTGAGCACGCATTTCCAAAGCTTGTATCAAAATCGAAGAGCAAACTTAGTCAGATTAGTGAGCTGTCGGGAGCGAATGTAAAGCTGATAGAAGATCAACCGGAGATGACCCAAAAGATTATTCAGATATCAGGTGCACGGGAGCAGGTCGAAAGAGCCCAGAGCTTGCTTCAAGGCTTCATTTTGAGC 1941 45.96 MERSRSKRNYYYEPQDYDSDTVPRTRARYNNTHYPPSNHRHRGNAARPSKPPQDQSPVLTTTYRILCHDMKVGGVIGKSGSIIKSIRQHTGAWINVHELVPGDDERIIEITDTRRRDPDGRLPSFSPAQEALIMIHERTLEGDVGAGFSGTKYDTGDEEDEYGAVRGGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRNETKTQIRVLPRDHNIPRCVSMSEEIVQVVGDPNAVKNAVAIIASRLRESQHRDRSHFHGRIQSPERFYSPEDDYMPPATNVARRASMDGASVRSRLSTNNSRGSNYTARSYMSDTGASPMVDNMQPLYSDELIVFRMLCPTDRVESVVGESDGFVELLQNEVGVDVKVSDAIAGSEEQIIVISSEEGPDDDLFPAQEALLHIQTRIVDIIPDKENIVTTRLVVSSSDIGCLEGRSGSLLEMKKMTGADIQILPREELPACVASTDELVQIIGEIKAARDALVEVTSRLRSYIYRELFQKDVVGKETLSPNNNAGTRQVHSGNDSQNAPHLNVQPLPSTLPIKAIGYSVAELTKQSESDHTQDVPSSLNRIPVPLVTRSTIEVVIPEHAFPKLVSKSKSKLSQISELSGANVKLIEDQPEMTQKIIQISGAREQVERAQSLLQGFILS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3084462 3087678 + Bpe025363 Bpe03g00230 100735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00230 647 MobiDBLite consensus disorder prediction 505 530 - -
Bpe03g00230 647 CDD PCBP_like_KH 176 243 - -
Bpe03g00230 647 MobiDBLite consensus disorder prediction 1 57 - -
Bpe03g00230 647 CDD KH-I 579 642 - -
Bpe03g00230 647 MobiDBLite consensus disorder prediction 24 38 - -
Bpe03g00230 647 MobiDBLite consensus disorder prediction 1 23 - -
Bpe03g00230 647 ProSiteProfiles Type-1 KH domain profile. 332 399 - -
Bpe03g00230 647 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 527 - -
Bpe03g00230 647 Gene3D K Homology domain, type 1 169 251 IPR036612 GO:0003723
Bpe03g00230 647 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 527 - -
Bpe03g00230 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 329 399 IPR036612 GO:0003723
Bpe03g00230 647 SMART kh_6 59 140 IPR004087 GO:0003676
Bpe03g00230 647 SMART kh_6 415 489 IPR004087 GO:0003676
Bpe03g00230 647 SMART kh_6 576 646 IPR004087 GO:0003676
Bpe03g00230 647 SMART kh_6 171 247 IPR004087 GO:0003676
Bpe03g00230 647 SMART kh_6 331 404 IPR004087 GO:0003676
Bpe03g00230 647 Gene3D K Homology domain, type 1 576 646 IPR036612 GO:0003723
Bpe03g00230 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 169 253 IPR036612 GO:0003723
Bpe03g00230 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 409 499 IPR036612 GO:0003723
Bpe03g00230 647 Gene3D K Homology domain, type 1 59 141 IPR036612 GO:0003723
Bpe03g00230 647 Gene3D - 333 492 - -
Bpe03g00230 647 MobiDBLite consensus disorder prediction 285 307 - -
Bpe03g00230 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 569 645 IPR036612 GO:0003723
Bpe03g00230 647 Pfam KH domain 579 642 IPR004088 GO:0003723
Bpe03g00230 647 Pfam KH domain 418 483 IPR004088 GO:0003723
Bpe03g00230 647 Pfam KH domain 175 243 IPR004088 GO:0003723
Bpe03g00230 647 Pfam KH domain 62 111 IPR004088 GO:0003723
Bpe03g00230 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 50 112 IPR036612 GO:0003723
Bpe03g00230 647 MobiDBLite consensus disorder prediction 291 307 - -
Bpe03g00230 647 ProSiteProfiles Type-1 KH domain profile. 577 641 - -
Bpe03g00230 647 CDD PCBP_like_KH 62 136 - -
Bpe03g00230 647 ProSiteProfiles Type-1 KH domain profile. 172 242 - -
Bpe03g00230 647 ProSiteProfiles Type-1 KH domain profile. 60 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00230 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 874.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00230 Bpe-Chr3:3084462 Bpe11g01454 Bpe-Chr11:10794593 6.77E-22 dispersed
Bpe03g00230 Bpe-Chr3:3084462 Bpe14g00170 Bpe-Chr14:2092964 1.72E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00230 Bpe_Chr03 FPKM 0.111111 0.0 0.0 0.0 0.0 0.170519 0.520645 0.446629 0.311994 0.429116