Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe03g00232 | ATGGATCTCGATAGCATTGAGTGCGTGTCGGATGGTCTGGACGAGGATGAGATCCATCAGAACCGTACCCTTTATCCGCATCCTCATCCTCATCCTCATCCTCATCATCACCCTGAGTTTGGGGCTTCGAAACCTCGCAATGGCACTACCAATGGCGCTGTTGCTGTTCCGACTGCGACTGCTCCAGCCACCAGCGTCCATGAGTTGCTCGAATGCCCAGTCTGTACCAATTCTATGTACCCACCAATCCATCAGTGCCATAATGGGCACACCTTATGTTCGACATGTAAAACAAGAGTACACAACCGATGCCCCACTTGTCGGCAAGAGCTGGGAGATATAAGGTGCTTGGCACTAGAAAAGGTAGCAGAGTCGCTTGAATTGCCGTGCAAGTACTACTCCTTGGGATGTCCAGAGATCTTCCCCTACTACAGCAAACTCAAGCACGAGGCGATGTGCAATTTCAGACCATATAATTGCCCTTATGCAGGATCGGAGTGCTCAATCGCGGGGGATATTCCTTTTCTCGTTGCTCATTTGCGGGATGATCACAAAGTCGATATGCACACAGGCTGCACTTTTAACCATCGCTATGTCAAGTCAAATCCTCGAGAAGTCGAGAATGCTACTTGGATGCTCACTGTATTCCATTGTTTTGGGCAGTACTTCTGCCTCCATTTTGAAGCTTTCCAGCTCGGAATGGCACCTGTTTACATGGCGTTTCTCCGCTTTATGGGCGATGAGAATGAGGCTCGAAGCTACAGCTACAGCCTTGAGGTTGGCGGGTATGCTCGAAAATTGATATGGGAGGGAAGTCCACGAAGCATTAGGGACAGCCATCGAAAGGTTAGGGATACGCACGACGGGCTAATAATTCAAAGAAACATGGCGCTTTTCTTCTCCGGTGGGGATAGAAAGGAGCTGAAATTGAGAGTTACAGGGAGGATATGGAAGGAGCAGAACCCAGATGCTGTTGTGTGCATACCAAACCTGTGTAGC | 999 | 49.35 | MDLDSIECVSDGLDEDEIHQNRTLYPHPHPHPHPHHHPEFGASKPRNGTTNGAVAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYNCPYAGSECSIAGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARSYSYSLEVGGYARKLIWEGSPRSIRDSHRKVRDTHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAVVCIPNLCS | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3103483 | 3105162 | + | Bpe025364 | Bpe03g00232 | 100737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe03g00232 | 333 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 325 | - | - | |
Bpe03g00232 | 333 | SUPERFAMILY | RING/U-box | 60 | 112 | - | - | |
Bpe03g00232 | 333 | SUPERFAMILY | TRAF domain-like | 125 | 317 | - | - | |
Bpe03g00232 | 333 | MobiDBLite | consensus disorder prediction | 26 | 48 | - | - | |
Bpe03g00232 | 333 | ProSiteProfiles | Zinc finger SIAH-type profile. | 125 | 185 | IPR013010 | GO:0008270 | |
Bpe03g00232 | 333 | Pfam | Seven in absentia protein family | 114 | 313 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Bpe03g00232 | 333 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 124 | IPR013083 | - | |
Bpe03g00232 | 333 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 178 | IPR013083 | - | |
Bpe03g00232 | 333 | CDD | RING-HC_SIAHs | 70 | 108 | - | - | |
Bpe03g00232 | 333 | ProSiteProfiles | Zinc finger RING-type profile. | 72 | 108 | IPR001841 | - | |
Bpe03g00232 | 333 | CDD | Sina | 186 | 314 | - | - | |
Bpe03g00232 | 333 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 325 | - | - | |
Bpe03g00232 | 333 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 179 | 313 | IPR008974 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe03g00232 | Bpe07g01014 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe03g00232 | Bpe-Chr3:3103483 | Bpe14g00945 | Bpe-Chr14:7028123 | 0 | dispersed | |
Bpe13g00984 | Bpe-Chr13:15613363 | Bpe03g00232 | Bpe-Chr3:3103483 | 0 | wgd | |
Bpe03g00232 | Bpe-Chr3:3103483 | Bpe07g01014 | Bpe-Chr7:15768477 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe03g00232 | K04506 | - | csv:101215696 | 632.869 |