Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00232 ATGGATCTCGATAGCATTGAGTGCGTGTCGGATGGTCTGGACGAGGATGAGATCCATCAGAACCGTACCCTTTATCCGCATCCTCATCCTCATCCTCATCCTCATCATCACCCTGAGTTTGGGGCTTCGAAACCTCGCAATGGCACTACCAATGGCGCTGTTGCTGTTCCGACTGCGACTGCTCCAGCCACCAGCGTCCATGAGTTGCTCGAATGCCCAGTCTGTACCAATTCTATGTACCCACCAATCCATCAGTGCCATAATGGGCACACCTTATGTTCGACATGTAAAACAAGAGTACACAACCGATGCCCCACTTGTCGGCAAGAGCTGGGAGATATAAGGTGCTTGGCACTAGAAAAGGTAGCAGAGTCGCTTGAATTGCCGTGCAAGTACTACTCCTTGGGATGTCCAGAGATCTTCCCCTACTACAGCAAACTCAAGCACGAGGCGATGTGCAATTTCAGACCATATAATTGCCCTTATGCAGGATCGGAGTGCTCAATCGCGGGGGATATTCCTTTTCTCGTTGCTCATTTGCGGGATGATCACAAAGTCGATATGCACACAGGCTGCACTTTTAACCATCGCTATGTCAAGTCAAATCCTCGAGAAGTCGAGAATGCTACTTGGATGCTCACTGTATTCCATTGTTTTGGGCAGTACTTCTGCCTCCATTTTGAAGCTTTCCAGCTCGGAATGGCACCTGTTTACATGGCGTTTCTCCGCTTTATGGGCGATGAGAATGAGGCTCGAAGCTACAGCTACAGCCTTGAGGTTGGCGGGTATGCTCGAAAATTGATATGGGAGGGAAGTCCACGAAGCATTAGGGACAGCCATCGAAAGGTTAGGGATACGCACGACGGGCTAATAATTCAAAGAAACATGGCGCTTTTCTTCTCCGGTGGGGATAGAAAGGAGCTGAAATTGAGAGTTACAGGGAGGATATGGAAGGAGCAGAACCCAGATGCTGTTGTGTGCATACCAAACCTGTGTAGC 999 49.35 MDLDSIECVSDGLDEDEIHQNRTLYPHPHPHPHPHHHPEFGASKPRNGTTNGAVAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYNCPYAGSECSIAGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARSYSYSLEVGGYARKLIWEGSPRSIRDSHRKVRDTHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAVVCIPNLCS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3103483 3105162 + Bpe025364 Bpe03g00232 100737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00232 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 325 - -
Bpe03g00232 333 SUPERFAMILY RING/U-box 60 112 - -
Bpe03g00232 333 SUPERFAMILY TRAF domain-like 125 317 - -
Bpe03g00232 333 MobiDBLite consensus disorder prediction 26 48 - -
Bpe03g00232 333 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270
Bpe03g00232 333 Pfam Seven in absentia protein family 114 313 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bpe03g00232 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 124 IPR013083 -
Bpe03g00232 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 178 IPR013083 -
Bpe03g00232 333 CDD RING-HC_SIAHs 70 108 - -
Bpe03g00232 333 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Bpe03g00232 333 CDD Sina 186 314 - -
Bpe03g00232 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 325 - -
Bpe03g00232 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 179 313 IPR008974 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00232 Bpe07g01014 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00232 Bpe-Chr3:3103483 Bpe14g00945 Bpe-Chr14:7028123 0 dispersed
Bpe13g00984 Bpe-Chr13:15613363 Bpe03g00232 Bpe-Chr3:3103483 0 wgd
Bpe03g00232 Bpe-Chr3:3103483 Bpe07g01014 Bpe-Chr7:15768477 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00232 K04506 - csv:101215696 632.869