Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00237 ATGATAATCAAAAGGAATTTGAAATCCGGAATGCCGAGTCTGAGACGATGCAAACTCAGTGACTCGGTTGGTGAGGACGACGAGAGCTCAGCGGCGCGGAAGAAAAGAAAACTAAATGGGTACTACTACCCTCTAAACCTGCTTAGTGAGATAGCCGCTGGGGTAATTCCACTGAATTTCCGTGACATTATTCTTTCCGAGAGGAAGCTTGGGGCGCCATGGTGTACGGAGATATCTGGCTCCCCTGGTGATGATGTGGAGTTGAAACCAAAGGGCAGAAATTCTGCAGCAAGGACAAGAACGAATAGGACGGCGGAGGCTCCCCGCCCACCCATTGTGAGAACATTGAGAGGGCGGGTTCAGGTTCTTCCTTCTCGGTTTAATGATTCAGTCATTGAAAATTGGAGGAAAGAAGAGAGAGATAATTTGCTTGATGATAGTTTTGACGATGATATGGAATTGAAGAAAGATAATTTCAGTTTTAAAACACCAAAAATAGGTGGTCAGAATGAGAAGAAAGGTCGAATTAATGAAAGAAATGGTTACAAGTTTCGTAAATACTCAGCATTGTGCGAAGAAGATGGAGGAGACAAGTATCGTAAGTACTCGGCATTGTGCGAAGAAGACGGGGGAGAAGGCGTAAAATGGCTGAGGTTGAATCAGTTTGATGCCCGCAAGTATTCAAGCTCCCGAAGCTCCTTAACGTCAGTGCATGAGAAGTACCTGAATGAAGGAATTGAAGAACGATTTTGCATAATTGGTGAGGATAGAGCTTCGAAGGAAAAAGATTGGATGGGGGATGGTTTGTTTGGACCAGAAGACTTCTATTCAGGTGATATAGTATGGGCAAAACCAGGAAAAAAGGAGCCTTTTTGGCCCGCCATTGTCATTGATCCAATAATGCAAGCTCCTGAGCTTGTTTTGCGATCTTGCATACCTGACGCAGCTTGTGTTATGTTCTTCGGATATTCTGGGAACCAAAATCAAAGGGTAAGGGGGAATCATGGATTGTTCTTTCTTCTTTATTTTAAAAAAAAAATCAAAATCGCTTTATCTTATGCGCAGGATTATGCATGGGTGAAGCGGGGGATGATCTTTCCTTTTATGGATTGTGTGGACAGGTTCCAAGGACAGGTGGAGTTGGAAAAATGCAAACCATTTGATTTTCAGACGGCAGTGGAGGAAGCTTTTTTGGCAGAACGTGGGTTTACAGAGAAGCTGATAGCTGATATAAACATGGCAGCTGGTAATACAACTTTTGACGAATCTATTCTTAGAGGAATGCAGGAAGCCACAGGTTCAAACCAGGATCCTAATTGTCACTCTCCAAAACAGGATGTGTTTGGGAAGAAGAAAGACACGCAGCCTTGTGACGGTTGTGGCTTTAGACTTCCTTTCAAAACAACAAAGAAAATAAGCGGTGGAGGCCAATTGCTGTGCAAATCCTGTTCAAGGTTGACAAAATCAAATCATTTTTGTGGCATATGCAAAAAAATATGGAATCATACGGACAGTGGTAGTTGGGTTCGATGTGATGGTTGTAAGCTTTGGGTTCATGCAGAGTGTGACAAAATTTCGAGCAATCTATTCAAGAATCTGGACAGAACTGATTATTATTGTCCGACATGTAAAGCAAAGTTTGACTTTGAGCTATCAGATTCAGAGAAATGGCATTCGAAAGTCAAAAGTAGCAAAAACCATGATCAGTCAGTGCTTCCTGATAAAGTTACTGTTCTCTGCAATGGTGTGGAAGGCGTATACTTTCCAAGCTTTCACTTAGTTGTTTGCAAATGTGGGTTTTGTGGGACGGAAAAACAAGCACTCAGTGAATGGGAGCGACATACAGGTTCAAAATCAAGAAATTGGAAGACTAGTGTGAGTGTAAAAGGTTCTATGCTGCCACTTGAACAATGGATGCTGCAATTAGCTGAGTACCATGCCAACATTGTTTCTGTCAAACCTCCCAAAAGGTCCTCTATAAAAGAACGCAAACAAAAATTGCTTTCGTTTTTGCAAGTCCGCTTATATGTCATTATTCAAACTGTTGCAGAGAAATACGAACCTGTATTAGCCAGGTGGACAACAGAGCGATGTGCTGTGTGTAGGTGGGTTGAAGACTGGGATTACAATAAAATTATCATCTGCAACAGATGTCAGATAGCAGTTCATCAAGAATGCTATGGAGCTAGAAATGTTCGGGACTTCACTTCATGGGTTTGCAAAGCATGTGAAACACCTGATATCAGGCGGGAGTGTTGCCTATGTCCTGTAAAAGGCGGTGCCTTAAAACCCACTGATGTCGATACATTATGGGTCCATGTTACTTGTGCTTGGTTTAGACCGGAAGTCTCTTTTGCAAGCGACGAGAAGATGGAACCTGCTCTTGGAATCTTGAGTATTCCATCAAATTCTTTTGTTAAGATTTGTGTTATCTGTAAACAAATTCATGGTTCTTGCACACAATGTTGCAAATGTTCCACTTATTACCATGCTATGTGTGCATCGAGAGCGGGCTATCGAATGGAGTTGCACTGCTTGGAGAAATATGGAAGGCAAATTACCAAAATGGTCTCTTATTGTGCATATCACAGGTCCCCAAATCCAGATACTGTTCTCATTATACAGTCTCCTCAAGGTGTATTTTCGACTAAAAGCCTTCTTCAAAATAAGAAGAAAGCTGGTTCAAGACTAATTTCCTCAAATAGAACAAAGATGGAAGGGGTCTCTACGGCAGAAACTACTGAGCTTGAGCCATTCTCTTCGGCTAGGTGCCGGGTTTTTAAGAGATCAGAAAATAGCAGAAAGAGAATGGAAGAAGAAGCTGTTGCTCATCGAGTGATGGGCCACTGCCATCATCCTTTACGATCGATCTGCACCCTCAATGCATTTAGAGTAAGCGTTGTAGAGGAGCCAAAAGCATTTTCTTCCTTTAGGGAAAGGCTGCATAACTTGCAGAAAACAGAAAACGACAGAGTTTGTTTTGGTAGATCTGGTATACATGGATGGGGCCTATTTGCTCGCAGAAACATTCAAGAAGGAGAAATGGTACTTGAATATCGAGGTGAGCAAGTGAGACGAAGTATAGCAGATTTGAGAGAGGCTCGCTACAAATTAGTGGGCAAAGACTGCTATCTGTTTAAGATAAGCGAAGAGGTAGTGGTGGATGCAACCGACAAAGGAAACATAGCACGCTTGATAAACCATTCTTGCATGCCCAATTGCTACGCTAGGATCATGAGTGTCGGGGACGATCAAAGTCGGATAGTACTTATCGCCAAAACTACTGTACCAGCTGGCGATGAGCTCACGTATTTTTCTCACATTCTTTTTCTCTATCAAAAGGTGCATATGCTAAATCTATTGAATGTACGATTATTTGTTGGCAGGTACGATTATTTGTTCGACCCAGACGAGGCAGACGAACTCAAAGTTCCATGTTTATGTAGAGCTCAAACGTGTCGGAAATTCATGAAT 3474 42.26 MIIKRNLKSGMPSLRRCKLSDSVGEDDESSAARKKRKLNGYYYPLNLLSEIAAGVIPLNFRDIILSERKLGAPWCTEISGSPGDDVELKPKGRNSAARTRTNRTAEAPRPPIVRTLRGRVQVLPSRFNDSVIENWRKEERDNLLDDSFDDDMELKKDNFSFKTPKIGGQNEKKGRINERNGYKFRKYSALCEEDGGDKYRKYSALCEEDGGEGVKWLRLNQFDARKYSSSRSSLTSVHEKYLNEGIEERFCIIGEDRASKEKDWMGDGLFGPEDFYSGDIVWAKPGKKEPFWPAIVIDPIMQAPELVLRSCIPDAACVMFFGYSGNQNQRVRGNHGLFFLLYFKKKIKIALSYAQDYAWVKRGMIFPFMDCVDRFQGQVELEKCKPFDFQTAVEEAFLAERGFTEKLIADINMAAGNTTFDESILRGMQEATGSNQDPNCHSPKQDVFGKKKDTQPCDGCGFRLPFKTTKKISGGGQLLCKSCSRLTKSNHFCGICKKIWNHTDSGSWVRCDGCKLWVHAECDKISSNLFKNLDRTDYYCPTCKAKFDFELSDSEKWHSKVKSSKNHDQSVLPDKVTVLCNGVEGVYFPSFHLVVCKCGFCGTEKQALSEWERHTGSKSRNWKTSVSVKGSMLPLEQWMLQLAEYHANIVSVKPPKRSSIKERKQKLLSFLQVRLYVIIQTVAEKYEPVLARWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIRRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKYGRQITKMVSYCAYHRSPNPDTVLIIQSPQGVFSTKSLLQNKKKAGSRLISSNRTKMEGVSTAETTELEPFSSARCRVFKRSENSRKRMEEEAVAHRVMGHCHHPLRSICTLNAFRVSVVEEPKAFSSFRERLHNLQKTENDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYKLVGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDQSRIVLIAKTTVPAGDELTYFSHILFLYQKVHMLNLLNVRLFVGRYDYLFDPDEADELKVPCLCRAQTCRKFMN 1158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3153381 3163956 + Bpe025365 Bpe03g00237 100742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00237 1158 CDD PHD_ATX3_4_5_like 697 743 IPR042011 -
Bpe03g00237 1158 Pfam SET domain 1001 1104 IPR001214 GO:0005515
Bpe03g00237 1158 SMART PHD_3 808 864 IPR001965 -
Bpe03g00237 1158 SMART PHD_3 492 544 IPR001965 -
Bpe03g00237 1158 SMART PHD_3 697 744 IPR001965 -
Bpe03g00237 1158 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1130 1158 - -
Bpe03g00237 1158 Pfam PHD-finger 710 744 - -
Bpe03g00237 1158 PANTHER PHD FINGER PROTEINS 1130 1158 - -
Bpe03g00237 1158 Pfam PHD-finger 492 545 IPR019787 -
Bpe03g00237 1158 Gene3D - 272 402 - -
Bpe03g00237 1158 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1104 - -
Bpe03g00237 1158 SUPERFAMILY FYVE/PHD zinc finger 696 760 IPR011011 -
Bpe03g00237 1158 MobiDBLite consensus disorder prediction 81 106 - -
Bpe03g00237 1158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 747 866 IPR013083 -
Bpe03g00237 1158 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1158 IPR025780 -
Bpe03g00237 1158 ProSiteProfiles Zinc finger PHD-type profile. 490 546 IPR019787 -
Bpe03g00237 1158 ProSitePatterns Zinc finger PHD-type signature. 698 743 IPR019786 -
Bpe03g00237 1158 SMART set_7 990 1114 IPR001214 GO:0005515
Bpe03g00237 1158 SUPERFAMILY FYVE/PHD zinc finger 489 548 IPR011011 -
Bpe03g00237 1158 CDD SET_SETD1-like 977 1154 - -
Bpe03g00237 1158 ProSiteProfiles Post-SET domain profile. 1142 1158 IPR003616 -
Bpe03g00237 1158 ProSiteProfiles SET domain profile. 990 1107 IPR001214 GO:0005515
Bpe03g00237 1158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 746 IPR013083 -
Bpe03g00237 1158 Gene3D SET domain 877 1158 IPR046341 -
Bpe03g00237 1158 ProSiteProfiles Extended PHD (ePHD) domain profile. 749 864 IPR034732 -
Bpe03g00237 1158 Pfam PHD-zinc-finger like domain 751 863 - -
Bpe03g00237 1158 Pfam PWWP domain 278 397 IPR000313 -
Bpe03g00237 1158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 547 IPR013083 -
Bpe03g00237 1158 ProSiteProfiles Zinc finger PHD-type profile. 695 746 IPR019787 -
Bpe03g00237 1158 MobiDBLite consensus disorder prediction 431 453 - -
Bpe03g00237 1158 CDD PHD_TCF19_like 493 543 - -
Bpe03g00237 1158 CDD ePHD_ATX3_4_5_like 752 863 IPR041955 -
Bpe03g00237 1158 SUPERFAMILY Tudor/PWWP/MBT 270 407 - -
Bpe03g00237 1158 PANTHER PHD FINGER PROTEINS 1 1104 - -
Bpe03g00237 1158 SUPERFAMILY SET domain 984 1155 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00237 - - - zju:107414611 1657.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00237 Bpe-Chr3:3153381 Bpe05g01032 Bpe-Chr5:22904842 5.62E-126 dispersed
Bpe06g00622 Bpe-Chr6:17034490 Bpe03g00237 Bpe-Chr3:3153381 5.01E-08 dispersed
Bpe10g00542 Bpe-Chr10:12472958 Bpe03g00237 Bpe-Chr3:3153381 5.54E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007355 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21075 PF00855 PWWP 2.80E-09 CL0049 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00237 Bpe_Chr03 FPKM 1.349558 1.191657 0.135985 0.068825 0.401501 0.0 0.0 0.0 0.0 0.09404