Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00248 ATGGAGAATATGCTGTATGCCGAAGAGCTTGTGAGAGATTTTCTTATTTTCAGGGGATTTTCTGGTACACTGCAAGCTTTTGAGGCTGAACTAACCACCGATATCAGCAAAGAGAAGAATACTATAAACCGCCTCAAGAAAGACATCAAGCATCTCAATCTAAAGTTATCCCAACTTCAGGCTTTATTGGAGGAAAAAGATGCTCAACTTAGCCAGTTAAAGAGGCAAATTGCTATTTCCGTGCCAATGCGAGCAAGCTTGGGCCAAATTGACAGTTCATCCGGTGTACAACATGAAGAAAATATTCTTCGATCCACAGATAATCTAGAAGCTTGTTCACATGCTTCCCTTCAATCAGGAGAAAATGAGCTGCTGGATAGAGCTGTTTCTCAACCTGCTGAAATTCATCCGGATCTTATGACGTCCAACACTTGTCATGTCTCAAGCTCTTCACAAAAACTTGATCTGGAAGATGAAGATATTGGCATTGCAAGCTATATATTTGGAGATAATAAGGAAAATGGCAGAGAAAGTGATGTACAAGAAGATTTTCCTGAAGTTAAACTAGAGTTTCAGGAGACATTTTTGGGCCACACTAGTCCAATTAGTCGTTGCCGCTTCTCTGCCACTGGGGACAATATAGCAAGTGCTTCTCTGGATGGCACAGTCAGGATATGGACTTATGACTCCTCTACTTCAGCTTCCAGAAATGCGACCATTTACTGTGGAGCAGAAATCATGTCATTGGACTGGGAATGCAAGTCAAATCGTTTGCTTCTCATTGGCACTTCTAATGCTGGCATCAAAGCATGGAATGTTGATGCAAAGAGAGTTGTTTGTGATCTGAACATGTCCGAAATATTTCCAAGTGTATTGGATATCAAGTGCAGCCCCGTTGAGCCAATATTTGTATCTGCAGCAGCATCCAGAGGACAAGGTGTGAGCTATATTGATAGTTTAGGATATGCTTCACTCACAGTGTGGAACATGAAGACATGGAAGCCTATGACAGTACTTCCGCTTGGCAAGGATCCTCCTGCAATCACGTCTTTATGCTTCAATCACAATGGAAAGATTTTAGCTGCCTCTGCCACTGATGGAATGATTCACATGTTTGATATGTCTGCTTGTCTACAAATCACTGGATGGCCTGCACATGATTCTGCTATAAACTCGATTCTTTTCGGACCAGATGAGACGAGCATTTTCACCTTCGGGGTAGATGGAAAGGCAAGTACTTTATCTATTTTTGAATGGAGCTTGCAAAACCAGGGCCAAGTCCTTTGGTCACGAAATTGTGGCAGGTATTGTGATCCCGAGAGCACAATGCTTTTGAGACATGAAATGGCTTTAGACCCTCATGGGAAGAGGCTCTTAGCCACGTCTGGTTCTGTGAGAGCACCCATTTATCAGGTTCGAGGCAGGAATAGTGGGCTAAGAACTCTTCCACACACTGCAGCCATAACAACAGTTGATTGGCACCCAACGCTGCCTGTTTTCTTAACTGGCTCAGCCGATAACTCGGTCCGAGTCTCATCTCTGCTTTAA 1548 43.22 MENMLYAEELVRDFLIFRGFSGTLQAFEAELTTDISKEKNTINRLKKDIKHLNLKLSQLQALLEEKDAQLSQLKRQIAISVPMRASLGQIDSSSGVQHEENILRSTDNLEACSHASLQSGENELLDRAVSQPAEIHPDLMTSNTCHVSSSSQKLDLEDEDIGIASYIFGDNKENGRESDVQEDFPEVKLEFQETFLGHTSPISRCRFSATGDNIASASLDGTVRIWTYDSSTSASRNATIYCGAEIMSLDWECKSNRLLLIGTSNAGIKAWNVDAKRVVCDLNMSEIFPSVLDIKCSPVEPIFVSAAASRGQGVSYIDSLGYASLTVWNMKTWKPMTVLPLGKDPPAITSLCFNHNGKILAASATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTFGVDGKASTLSIFEWSLQNQGQVLWSRNCGRYCDPESTMLLRHEMALDPHGKRLLATSGSVRAPIYQVRGRNSGLRTLPHTAAITTVDWHPTLPVFLTGSADNSVRVSSLL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3288185 3292806 - Bpe012101.2 Bpe03g00248 100753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00248 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 230 - -
Bpe03g00248 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 481 515 IPR001680 GO:0005515
Bpe03g00248 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 236 IPR001680 GO:0005515
Bpe03g00248 515 Coils Coil 28 76 - -
Bpe03g00248 515 Gene3D - 448 514 IPR015943 GO:0005515
Bpe03g00248 515 Pfam WD domain, G-beta repeat 345 373 IPR001680 GO:0005515
Bpe03g00248 515 Pfam WD domain, G-beta repeat 479 511 IPR001680 GO:0005515
Bpe03g00248 515 Pfam WD domain, G-beta repeat 192 226 IPR001680 GO:0005515
Bpe03g00248 515 Gene3D - 319 447 IPR015943 GO:0005515
Bpe03g00248 515 PANTHER OS05G0299300 PROTEIN 1 514 - -
Bpe03g00248 515 SMART WD40_4 188 227 IPR001680 GO:0005515
Bpe03g00248 515 SMART WD40_4 233 272 IPR001680 GO:0005515
Bpe03g00248 515 SMART WD40_4 374 418 IPR001680 GO:0005515
Bpe03g00248 515 SMART WD40_4 475 513 IPR001680 GO:0005515
Bpe03g00248 515 SMART WD40_4 332 373 IPR001680 GO:0005515
Bpe03g00248 515 Gene3D - 23 312 IPR015943 GO:0005515
Bpe03g00248 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 481 515 - -
Bpe03g00248 515 SUPERFAMILY WD40 repeat-like 170 511 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00248 K24760 WDR91; WD repeat-containing protein 91 - qsu:112036362 682.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00248 Bpe-Chr3:3288185 Bpe11g01842 Bpe-Chr11:14825652 1.15E-08 dispersed
Bpe03g00248 Bpe-Chr3:3288185 Bpe06g00115 Bpe-Chr6:1804140 5.07E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00248 Bpe_Chr03 FPKM 18.112837 21.341158 0.901127 1.371916 59.646782 80.024948 60.750607 0.0 0.0 0.0