Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00261 ATATTCTATATTGATTGGTCTTTAGAATCTGCTGCGGTATCAAGAAAAAGAAGAAAAAGCAAGCTGAAACGTGGGAGTTCAGAACATGAAGTCTCAGGGCATGCTGGCAATTTGTCTCCTACATCGACAGGACAAAGCAAGTTAAATGAAACTAACAAGCAACGAATTCATAATTCTACAAGTAAAGGAAAAGACAGTAATAGGGAAAAAAACTTCTCTCCAGTCATATTTTATGGGTCTCCTCATGGTGTGCCTCCAAAAAGACCATCTAGCTTGTTGCGGTTATTGCATGAAATACGTATTGATCTCGCTGCGAACAATGAATTGAAGTTAAGAAGGGACGTATGGGCTACATTTCCTAGGCAGGAAGAGGCCATTAAGTTTGTTGCTCAGCAACATACACATGTCCGTATTTTTAGTTATCAGAATCATTATAATGGACAAAGGAGATTCCTTGTGGCAGGATATGAGGAGTTTTGGCAAAGATACAAAAGTATGGATTCCCAATTCCGTCATCATTATGAAGTGATTCAAGAGGGTTTGCCGTGTCACCTTTACTTTGATTTGGAATACTGTAAGAGAGTCAATACAGAAAAAAATGGAGATGACATGGTTGACTTGTTGATATCAGTTATGTTTGAAGCCCTACATGAAAAGTACTCGATACAAGGAAATCGTGACTGGATAATAGAGCTTGATTCCTCAACTGAAGAAAAATTTTCTCGTCACTTGATTATGAGAATTCCAAAGACTGCATTTAAGGACAATTCTCATGCAGGCGCATTTGTTGTAGAGATATGCTCACAGATACGTGGTTCAAAGGAGGGTGGAAGATTTCATGGCCTGTTTGTTAAAAAAGATGCAAGTTCTATTGAATCATCAAGCCAACTCTTTGTGGATACAGCCGTGTATTCTAGAAATCGATGTTTTCGTCTGGCTCTATCATCTAAGGCAGGAAAGACATCTCAGCTTCTACCTACCAATCGATTCTCTTGTAAGGACATGAGGGAGAAAGATGTGTTTATGGCATCCTTGATCTGCAATATTGACGTTGATTGTGAGAAGCTTCTTGTCTGCAAGATGGAGTTAGAATGTGCTAAGACCCTGCACTTTGAAACAGAGGTAAATCAGAACTTTGAACGATATTGCAGTGTCGCTGCGGAATCATTAAATCATTGCTTAACTGCTGTTTCAGCATCTTATTTAGTTGGAAAGTCGCCAATCCCAGCCGTTGACAACTTCGTGGAGTTTGTTGCATCTATAGGAAATGTACCAGGAAAAATACGATCTTGGTATTGGTTCTCAGAGTATGGTCTAATGGTCTATAGCATGTCAAGAAATAGGTACTGTGAACGAATTGGTCGCGAGCACAAAAGCAACCATGTGATTTATGTCGTTGACCTGAGAAGAGAGGTTTATTATCAGAAATGTCATGATCCAGACTGTAAAGGCTATCGATCGCCCTTGCGGCCTGTCCCACTTGGCATTATTTCAGTTCCTTGGAGTTTGGCTGATTCAGTAGAGGTTGTTAAGGATCGAGAATTGACACATAACAGGATCAGTTCTCTTTTGCTTGATGATGAACATATGTATCTTCAGCTTTCCAACGAGGAAGGCATTTCAGAGGTGAGAGGAGAAGATTCATGGTGGCTTGATGCTGTGAGGATTGCAGACAGTATTGAGAAGAGGAAAAATGTGGTAAGAAAAAAATTCAACTTTGAGGACAATGACTCTTTCGATGCAGTGGAGAGAAGTCAAGTTTGTTGTCGTTTATTTATTGATGGAATTTTCTCTCACATTGAAGGAGGTCTTGGTCTATTTCAATCGTCTTCTTCCCCTACCCTCTCTTCTGAACCCCCCCGACTGCTTTCATCAATGGCTTCCTCTTCCACTTTTACAAACCAAGAAACAAATTCCAAAGTGGATAATCACAACACCAACAACAGATCCCCATTTTTCTTCATCTCCGACACTCTCCAATCCATCCTCTCCTACCCGACTCTGATCGATCATCTTCACTTACATCTCCCCGCTGCCTCACCTACAATTTCCAGCCCGGCTCGCCAAAACTACGCCGTTTCACCTTCTTCCTCTCTCCTCCTGATGCCCTCTTGGTCCTCCTCTCCCTCTCTTCCTTACATCGGTGTCAAGCTGGTGACCTATTTTCCTGAAAATTCTTTGCTTAACTTACCAGGCGTTCATGCCAGTTATGAGCTCTTCAGCTCACTCACCGGCCAGAGTTTAGCCTCCATGGATGGAACTACACTTACCCTTTACAGAACTGCATGTGTATCTGGTTTGGCTTCAAAGCTATTGGCTAGAAATGACAGTCAAGTGTTGGTCATGATCGGTGCAGGGGCTTTAGCCCCTCACTTGATCAAAGCTCATCTTTCAGCAGTACCCAGTTTGAGGAAGGTGGTGATCTGGAATCGCAACCCGGAAAAGGCGAGAAAATTAGCTGAGAAAATGCAGGAAAATTCCAGGTTAAGTGGGATTGTTTTTGAAAGCAATGAATCCTTAGAGGATGCTACTGCCATGGGTGATATTGTGAGCTCTGCAACTAACTCTGAGGTGCCTCTTGTGAAGGGGGAGAAGTTGAAGGCTGGAGCACATCTAGACATGGTGGGATCATTCAAGCCGTCGATGAGAGAGTGTGATGATTTAGCAATAAAAAGAGGAAGGGTTTTTGTGGATAATGAGGCTGCTTTGGAGGAGGCAGGGGAGTTGGTCGGAGCTTTTGAAAGAGGGGTGATTGGGAAAGAGGAAATTGGTGGGGATTTGGTTGAGTTGATTAGAGGACAGAAAGTTGGAAGGACAAGTGTAGAAGAGATCACTGTGTTTAAGTCCGTTGGCTCTGCTGTGGTGGATTTTCTAGCTGCACAGTTTGTGTATGAAACTTACTTATCCTCTTCATTTCCTGCATAA 2925 42.32 IFYIDWSLESAAVSRKRRKSKLKRGSSEHEVSGHAGNLSPTSTGQSKLNETNKQRIHNSTSKGKDSNREKNFSPVIFYGSPHGVPPKRPSSLLRLLHEIRIDLAANNELKLRRDVWATFPRQEEAIKFVAQQHTHVRIFSYQNHYNGQRRFLVAGYEEFWQRYKSMDSQFRHHYEVIQEGLPCHLYFDLEYCKRVNTEKNGDDMVDLLISVMFEALHEKYSIQGNRDWIIELDSSTEEKFSRHLIMRIPKTAFKDNSHAGAFVVEICSQIRGSKEGGRFHGLFVKKDASSIESSSQLFVDTAVYSRNRCFRLALSSKAGKTSQLLPTNRFSCKDMREKDVFMASLICNIDVDCEKLLVCKMELECAKTLHFETEVNQNFERYCSVAAESLNHCLTAVSASYLVGKSPIPAVDNFVEFVASIGNVPGKIRSWYWFSEYGLMVYSMSRNRYCERIGREHKSNHVIYVVDLRREVYYQKCHDPDCKGYRSPLRPVPLGIISVPWSLADSVEVVKDRELTHNRISSLLLDDEHMYLQLSNEEGISEVRGEDSWWLDAVRIADSIEKRKNVVRKKFNFEDNDSFDAVERSQVCCRLFIDGIFSHIEGGLGLFQSSSSPTLSSEPPRLLSSMASSSTFTNQETNSKVDNHNTNNRSPFFFISDTLQSILSYPTLIDHLHLHLPAASPTISSPARQNYAVSPSSSLLLMPSWSSSPSLPYIGVKLVTYFPENSLLNLPGVHASYELFSSLTGQSLASMDGTTLTLYRTACVSGLASKLLARNDSQVLVMIGAGALAPHLIKAHLSAVPSLRKVVIWNRNPEKARKLAEKMQENSRLSGIVFESNESLEDATAMGDIVSSATNSEVPLVKGEKLKAGAHLDMVGSFKPSMRECDDLAIKRGRVFVDNEAALEEAGELVGAFERGVIGKEEIGGDLVELIRGQKVGRTSVEEITVFKSVGSAVVDFLAAQFVYETYLSSSFPA 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3555141 3572335 - Bpe012114.2 Bpe03g00261 100766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00261 974 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 658 968 IPR036291 -
Bpe03g00261 974 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 19 564 IPR044917 GO:0003887|GO:0003896|GO:0042276
Bpe03g00261 974 MobiDBLite consensus disorder prediction 15 72 - -
Bpe03g00261 974 Pfam Herpesviridae UL52/UL70 DNA primase 433 494 - -
Bpe03g00261 974 MobiDBLite consensus disorder prediction 32 56 - -
Bpe03g00261 974 Pfam Ornithine cyclodeaminase/mu-crystallin family 696 969 IPR003462 -
Bpe03g00261 974 Gene3D - 774 951 - -
Bpe03g00261 974 Gene3D ornithine cyclodeaminase, domain 1 681 964 IPR023401 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00261 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7] - jre:109010834 739.184
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g781 . . Bda05g00095 . Bpe03g00261 . Bma10g01257 . Cmo16g00102 . . . . . . . . Bhi01g01413 . . . . . . . . . . . . . Cone1ag1196 . . . Lsi05g01187 . . . Blo07g00371 . . . . . . . . . . Cma16g00095 . Car16g00085 . . . . . . . . . . Cla05g00920 Cam05g1008 Cec05g1012 Cco05g1008 Clacu05g0996 . . . Csa03g01753 Chy06g00982 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009435 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00261 Bpe_Chr03 FPKM 0.0 0.0 0.169267 0.0 0.0 0.0 0.0 0.0 0.0 0.0