Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00290 ATGGTGGCTTCGTCGATAGTGAATACGTATCCATTATCGAGCTACACCTTCGGGACGAAAGAGCCAAAGATGGAGAAGGATACCTCTGTTGCTGATCGACTTGCTCGTATGAAACTCAATTATATGAAAGAAGGGATGAGGGTGAGCGTTGAAGCCATCTTGTTGGTCCAAGAACACAATCATCCTCACATACTTCTTCTGCAAATTGGCAATACATTTTGTAAACTTCCGGGTGGGCGCCTGAAACCAGGAGAAAATGAAATTGAAGGTCTAAAAAGAAAATTAACTAGCAAGCTTGGTGCTAATTCAGCTGCTCTCGTACCAACCTGGCAGATTGGTGAATGTGTGGCTACATGGTGGAGGCCAAATTTTGAGACCATGATGTATCCATATTGTCCTCCGCACATAACAAAACCCAAGGAGTGTAAAAAGCTTTTCCTTGTGCACTTGTCTGAAAGAGAGTACTTTGCAGTGCCTAAGAATTTGAAACTTCTCGCTGTTCCCTTGTTCGAACTCTACGATAATGTCCAGAGATATGGGCCGGTAATATCGACCATCCCACAGCAGCTGTCTAGATTCCAATTCAACATGATCACTACATAA 603 43.28 MVASSIVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRVSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSAALVPTWQIGECVATWWRPNFETMMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3950605 3952823 - Bpe012142.1 Bpe03g00290 100795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00290 200 Pfam Nucleotide hydrolase 7 193 IPR016706 GO:0003729|GO:0005849|GO:0006378
Bpe03g00290 200 ProSiteProfiles Nudix hydrolase domain profile. 46 171 IPR000086 -
Bpe03g00290 200 SUPERFAMILY Nudix 45 152 IPR015797 -
Bpe03g00290 200 PANTHER PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 2-LIKE 1 182 - -
Bpe03g00290 200 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 1 182 IPR016706 GO:0003729|GO:0005849|GO:0006378
Bpe03g00290 200 PIRSF CPSF-25 1 200 IPR016706 GO:0003729|GO:0005849|GO:0006378
Bpe03g00290 200 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00290 K14397 NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5 - mnt:21398858 399.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00115 Bpe-Chr3:1670494 Bpe03g00290 Bpe-Chr3:3950605 5.26E-149 dispersed
Bpe03g00290 Bpe-Chr3:3950605 Bpe13g01245 Bpe-Chr13:17701588 1.35E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g657 . . Bda05g00066 Bda07g01863 Bpe03g00290 . Bma10g01220 Bma14g02087 . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1154 Cone5ag0863 . . . . . . Blo07g00414 Blo09g00108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001250 4 2 3 6 3 1 4 1 1 2 1 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 3 3 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00290 Bpe_Chr03 FPKM 2.571673 1.6922 10.157947 10.703854 15.619926 13.797351 17.923702 2.892634 3.022087 2.930394