Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00294 ATGGAGTTGAAGCTACTGTTTCTGGGTTTTCTCGTATTAAACCTTCGCATTATGAGCTCCGACGCCATTTCTGGTTCTAACAAAGAAAACCCAGAAAGTGAAAGCTTGCTTTCTTTCAAAAATGAGCTTGAAAATCCTGAAGCTCTCTCTTCCTGGAAGTTATCTGTACCACTATGTAACTGGGTCGGAATTTCATGTCAACTCGGCCGGGTTATTCAGGTCGCTTTACCAACTCTCTCTCTTAGAGGCACCCTCTCTCCTTTCCTATTCAACCTCTCTATGCTCTCTGTTCTCGACCTTTCCTCTAATTTCTTCTACGGTGAAATCCCACCGCAGATTTCCGGCCTTAAGCACTTAAAAGACCTTTCTCTGAATGACAACCAGCTTTCTGGCCAGTTTCCTGTTGAACTGACCGAGTTACCTCAGTTTGAAAGCCTCAAACTGGGTCTCAATTTCTTTACCGGAAGAATCCCCCCGGAGCTTGGAAAACTGAGAGAGCTTCACACTCTCGAGCTCTCCGGCAATGCCTTTGCCGGAAATTTACCGCCTCATATTGGAAACTTGACGAAGCTGCAGTTCTTAGACCTGAGCAACAATCTTTTAACAGGTTCACTCCCATTAACTCTCTTTACAAAGCTTCAATCTTTAAGCTCAATAGATGTTTCAAACAACTCATTTTCCGGTAAAATCCCGCCCGAAATTGGTAATCTGAAGAATCTTACTGACCTTTATATTGGCATTAATATATTTTCTGGTCCTTTGCCTCGGGAACTTGGCGAGCTTTCACAGCTAGAGAACTTTTTCTCACCTGATTGTTCTATAACTGGTCCATTGCCTGAAGAATTATCACATTTAAAATCCTTGAGTAAACTTGACCTTTCCTATAACCCACTTCGATGTTCTATCCCCAAATTCTTTGGGAAGCTACAGAATTTGACCATTCTTAATCTTGTTTATGCGGAGCTTAATGGCTCGGTTCCCCCTGAGCTTGGAGAGTGTAGGAATTTAAAATCTTTGATATTGTCCTTCAACTCGCTCACTGGATCGTTGCCAAAAGAGCTTTCAAAGCTTCCTATGTTGACATTTTCTGCAGAAAAGAACCAACTTTCTGGTCCATTGCCTACTTGGCTTGGAAAGTGGAATCTGATTGACTCACTATTACTGTCAAGCAATCATTTTTCTGGGAAAATCCCTTTAGAGATCGGCAATTGTTCTATGCTGAAACACCTTAGCTTGAGCAACAACTTGTTGACGGGTTCAATCCCTGAAGAACTATGTAATGCAGTGTCTTTAACCGAGATCGATCTTGACAATAATTTTTTGTCGGGTACTATCGAAAGTGCTTTCGTTAACTGTAGAAATCTAACTCAGCTGGTTTTGGTGGATAATCAGCTTGTTGGTTCAATCCCAGAGTACCTTTTGCAGCTTCCTTTAATGGTGGTTGATCTTGACTCTAACAATTTCACTGGTTCTTTACCTGTAACTATATGGAGCGCTGTGAACTTAATGGAATTTTCCGCTTCAAATAATCAACTTGGGGGGCCTATTCCATTGGAGATTGGTAATGCAGCTGCATTGCAAAGACTTGTTCTTTGTAATAACATGCTGACTGGCACCATACCAAAGGAAATTGGAAATCTCTCAGCTCTCTCTGTTCTAAATTTGAATTCAAATCTGCTCAAAGGAACTATTCCACCTGAAGTTGGAGATTGCCTTGCATTAACCACTCTAGACCTTGGAAATAACAGCCTAAATGGATCAATTCCTGAAAAAATTGGGGATCTGGCTCAATTACAATGCTTAGTTCTTTCGCACAATGTTTTATCAGGGCCTATTCCTTCTAAGCCTTCTGCGTATTTTCGACAGGTGAATATTCCTGATTTGAGCTTTATTCAGCACCTTGGAGTCTTTGATCTTTCTTATAACAGGCTGTCTGGCGCAATACCCGAGGAACTAGGCAACTGCAAAGTGATAGTGGATCTTTTGATTAACAACAATCAGCTTTCTGGAAAAATTCCAAGCTCGATGTCTCGGTTGACAAATCTTACAACCTTGGATTTATCTGGGAATATGCTAACTGGTTCAATTCCTCGAGAATTTGGCGACGCTATCAAACTTCAAGGTTTGTATCTGGGAAATAATCAGCTCATTGGAACTATCCCAGAGAGCTTAGGTCAATTAAGCCGCTTGGTGAAGCTGAATTTAACTATGAATAAGCTATCTGGATTAGTTCCTGGAACCCTTGGCAAGCTGAAAGATCTTACCCATTTGGATCTAAGCTCAAATGAATTAAATGGTGAGCTTCCTTCTTCCCTTTCCACCTTGCTGAACCTTGTGGGCCTTTATGTCCAGCAGAACAGACTCTCTGGTCCAGTGGATGAACTGTTCTTGAATTCAACTTCATGGAGGATCGAAACAATGAATTTGAGCAATAATTTCTTTGAAGGAGTGATCCCAAAATCTTTGAGCTATCTCTCGTACTTGACTTCGTTAGACCTTCATGGAAACTTGTTTACAGGATCAATCCCTGCAGAAATTGGAGACTTGATGCAACTTGAGTATTTCGATGCGTCGAGAAACGATCTTTCCGGGCAGATCCCCGATAAAATATGCAATCTGATGAACCTTTTTTACCTGAATTTGGCAGAAAATAGATTGGAGGGTCCCATTCCCAGAAATGGTATTTGCCAAAATCTATCAAAGAATGTGCTGGCTGGAAATAAAGACCTCTGTGGTAGAATAATGGGTCTAGATTGTCAGATAAAAAACTTGGAGACATCTGCTTTGGTAAATGCTTGGAAAGTTACTGGAATAGTTGTTGGATGTATGATTCTGATTTTCACTGCAGCTTTTGCAATGAAAAGGTGGATTAGAAGAAGCAGCAGGGGAACTGAGACAGATGAAATGGAGGAAAGCAAGCTCAATGGCTTCCTAGACCCGAACATTTACTTCTTAAGTAGCAGCCGATCGAAAGAACCTCTGAGCATTAACGTGGCCATGTTTGAGCAGCCTCTTCTGAAACTAACGTTGGTTGATATTCTTCAAGCTACCAACAATTTCTGCAAGACAAACATTATAGGAGATGGAGGATTTGGGACTGTCTATAAGGCCACCCTACCTAACGGAAAAATAGTGGCCGTGAAGAAGCTAAGTGAGGCTAAGTCGCAGGGCCACCGAGAATTTATGGCTGAAATGGAAACTTTGGGCAAAGTTAAACACCAGAATCTCGTTTCGCTTCTAGGGTATTGCTCACTTGGAGAGGAGAAGGTTCTAGTCTATGAGTATATGATGAATGGAAGCTTGGATCTATGGTTGAGAAACAGGACCGGAACTCTCGAGGGTCTTAGCTGGGAGAGGCGGTTCAACATTGCCTCTGGTTCGGCTCGTGGGTTAGCATTTCTTCACCATGGATTCATTCCCCATATCATTCATAGAGACATTAAGGCAAGTAACATCCTCCTCAACGAAGAATTCGAGCCAAAAGTTGCAGATTTTGGGCTGGCTAGGCTGATTAGTGCTTGTGAGACTCATGTCACAACTGACATTGCTGGAACTTTTGGATATATTCCTCCCGAGTATGGCCAGAGTGGTCGGTCCACGACGAAAGGCGATGTCTATAGCTATGGCGTGATTCTGCTTGAATTGGTGACGGGAAAAGAGCCGACAGGACCGGATTTTAAGGAAATCGATGGAGGAAACTTAGTTGGATGGGTGTTTCAGAAGATCAAAAAGGGACATGCTGTTGATGTTCTTGATCCAACTGTTTTGAACGCTGATTCTAAGCAGATGATGCTTCAAATGCTGCAGATTGCCTGTGTTTGTTTGTCTGAGAATCCTACTAACAGGCCAACTATGCTTCAAGTCTGGAAATTCATGAAAGGGATGAAAGAGTGA 3894 42.06 MELKLLFLGFLVLNLRIMSSDAISGSNKENPESESLLSFKNELENPEALSSWKLSVPLCNWVGISCQLGRVIQVALPTLSLRGTLSPFLFNLSMLSVLDLSSNFFYGEIPPQISGLKHLKDLSLNDNQLSGQFPVELTELPQFESLKLGLNFFTGRIPPELGKLRELHTLELSGNAFAGNLPPHIGNLTKLQFLDLSNNLLTGSLPLTLFTKLQSLSSIDVSNNSFSGKIPPEIGNLKNLTDLYIGINIFSGPLPRELGELSQLENFFSPDCSITGPLPEELSHLKSLSKLDLSYNPLRCSIPKFFGKLQNLTILNLVYAELNGSVPPELGECRNLKSLILSFNSLTGSLPKELSKLPMLTFSAEKNQLSGPLPTWLGKWNLIDSLLLSSNHFSGKIPLEIGNCSMLKHLSLSNNLLTGSIPEELCNAVSLTEIDLDNNFLSGTIESAFVNCRNLTQLVLVDNQLVGSIPEYLLQLPLMVVDLDSNNFTGSLPVTIWSAVNLMEFSASNNQLGGPIPLEIGNAAALQRLVLCNNMLTGTIPKEIGNLSALSVLNLNSNLLKGTIPPEVGDCLALTTLDLGNNSLNGSIPEKIGDLAQLQCLVLSHNVLSGPIPSKPSAYFRQVNIPDLSFIQHLGVFDLSYNRLSGAIPEELGNCKVIVDLLINNNQLSGKIPSSMSRLTNLTTLDLSGNMLTGSIPREFGDAIKLQGLYLGNNQLIGTIPESLGQLSRLVKLNLTMNKLSGLVPGTLGKLKDLTHLDLSSNELNGELPSSLSTLLNLVGLYVQQNRLSGPVDELFLNSTSWRIETMNLSNNFFEGVIPKSLSYLSYLTSLDLHGNLFTGSIPAEIGDLMQLEYFDASRNDLSGQIPDKICNLMNLFYLNLAENRLEGPIPRNGICQNLSKNVLAGNKDLCGRIMGLDCQIKNLETSALVNAWKVTGIVVGCMILIFTAAFAMKRWIRRSSRGTETDEMEESKLNGFLDPNIYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILQATNNFCKTNIIGDGGFGTVYKATLPNGKIVAVKKLSEAKSQGHREFMAEMETLGKVKHQNLVSLLGYCSLGEEKVLVYEYMMNGSLDLWLRNRTGTLEGLSWERRFNIASGSARGLAFLHHGFIPHIIHRDIKASNILLNEEFEPKVADFGLARLISACETHVTTDIAGTFGYIPPEYGQSGRSTTKGDVYSYGVILLELVTGKEPTGPDFKEIDGGNLVGWVFQKIKKGHAVDVLDPTVLNADSKQMMLQMLQIACVCLSENPTNRPTMLQVWKFMKGMKE 1297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3991704 3995597 - Bpe012146.1 Bpe03g00294 100799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00294 1297 Gene3D Transferase(Phosphotransferase) domain 1 1096 1297 - -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 18 127 - -
Bpe03g00294 1297 SUPERFAMILY L domain-like 627 912 - -
Bpe03g00294 1297 SUPERFAMILY RNI-like 98 481 - -
Bpe03g00294 1297 PRINTS Leucine-rich repeat signature 191 204 - -
Bpe03g00294 1297 PRINTS Leucine-rich repeat signature 679 692 - -
Bpe03g00294 1297 SUPERFAMILY L domain-like 478 695 - -
Bpe03g00294 1297 ProSiteProfiles Protein kinase domain profile. 1020 1297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00294 1297 SMART serkin_6 1020 1292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00294 1297 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 687 823 - -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 805 1296 - -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 363 702 - -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 18 127 - -
Bpe03g00294 1297 Pfam Leucine rich repeat 804 862 IPR001611 GO:0005515
Bpe03g00294 1297 Pfam Leucine rich repeat 661 716 IPR001611 GO:0005515
Bpe03g00294 1297 Pfam Leucine rich repeat 729 788 IPR001611 GO:0005515
Bpe03g00294 1297 SMART LRR_typ_2 679 702 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 285 308 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 188 212 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 825 849 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 116 140 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 727 750 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 751 775 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 573 595 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 92 115 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 334 357 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 309 333 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 547 571 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 404 428 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 164 187 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 631 655 IPR003591 -
Bpe03g00294 1297 SMART LRR_typ_2 213 237 IPR003591 -
Bpe03g00294 1297 Gene3D Ribonuclease Inhibitor 31 141 IPR032675 -
Bpe03g00294 1297 Gene3D Ribonuclease Inhibitor 142 210 IPR032675 -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 118 379 - -
Bpe03g00294 1297 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1142 1154 IPR008271 GO:0004672|GO:0006468
Bpe03g00294 1297 Gene3D Ribonuclease Inhibitor 622 922 IPR032675 -
Bpe03g00294 1297 Gene3D Ribonuclease Inhibitor 211 360 IPR032675 -
Bpe03g00294 1297 Gene3D Ribonuclease Inhibitor 361 621 IPR032675 -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 81 208 - -
Bpe03g00294 1297 SUPERFAMILY Protein kinase-like (PK-like) 1001 1291 IPR011009 -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 118 379 - -
Bpe03g00294 1297 Pfam Protein tyrosine and serine/threonine kinase 1024 1290 IPR001245 GO:0004672|GO:0006468
Bpe03g00294 1297 SMART LRR_sd22_2 775 794 - -
Bpe03g00294 1297 SMART LRR_sd22_2 188 218 - -
Bpe03g00294 1297 SMART LRR_sd22_2 849 875 - -
Bpe03g00294 1297 SMART LRR_sd22_2 679 700 - -
Bpe03g00294 1297 SMART LRR_sd22_2 116 148 - -
Bpe03g00294 1297 SMART LRR_sd22_2 285 306 - -
Bpe03g00294 1297 SMART LRR_sd22_2 571 597 - -
Bpe03g00294 1297 SMART LRR_sd22_2 751 774 - -
Bpe03g00294 1297 ProSitePatterns Protein kinases ATP-binding region signature. 1026 1049 IPR017441 GO:0005524
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 687 823 - -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 805 1296 - -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 363 702 - -
Bpe03g00294 1297 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 81 208 - -
Bpe03g00294 1297 Gene3D Phosphorylase Kinase; domain 1 983 1095 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00205 Bpe-Chr2:1435335 Bpe03g00294 Bpe-Chr3:3991704 7.42E-76 dispersed
Bpe03g00294 Bpe-Chr3:3991704 Bpe13g00995 Bpe-Chr13:15696103 2.77E-46 dispersed
Bpe09g00480 Bpe-Chr9:13214635 Bpe03g00294 Bpe-Chr3:3991704 9.85E-08 dispersed
Bpe10g00974 Bpe-Chr10:15211628 Bpe03g00294 Bpe-Chr3:3991704 3.20E-21 dispersed
Bpe11g00052 Bpe-Chr11:392517 Bpe03g00294 Bpe-Chr3:3991704 1.51E-16 dispersed
Bpe11g01501 Bpe-Chr11:11123567 Bpe03g00294 Bpe-Chr3:3991704 3.28E-12 dispersed
Bpe11g01618 Bpe-Chr11:12318423 Bpe03g00294 Bpe-Chr3:3991704 1.41E-15 dispersed
Bpe12g00048 Bpe-Chr12:386704 Bpe03g00294 Bpe-Chr3:3991704 3.06E-13 dispersed
Bpe15g00005 Bpe-Chr15:1181124 Bpe03g00294 Bpe-Chr3:3991704 1.80E-07 dispersed
Bpe15g00642 Bpe-Chr15:17206332 Bpe03g00294 Bpe-Chr3:3991704 1.20E-122 dispersed
Bpe15g01249 Bpe-Chr15:20985250 Bpe03g00294 Bpe-Chr3:3991704 1.99E-31 dispersed
Bpe03g00294 Bpe-Chr3:3991704 Bpe04g01056 Bpe-Chr4:7837449 2.79E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63226 PF00069 Pkinase 3.30E-47 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00294 - - jre:109007628 1916.35