Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00296 ATGGAGGCTAATGGTGAAATGGGTTTACTAGGGGATCATTTGGAGGCTGATTTAGTGGGTAAATTGAGGGAAGATGGGTATGATAGCAGATCAGGCAGCGATGTTCCATCAGGGGATGAACATGATGGATCGGAAGAACAACCACGCAGAAGGAAGAAGTACCATAGACATACTCCTCATCAGATTCAAGAACTTGAAAATTTCTTCAAGGAGTGTCCCCACCCTGATGAGAAGCAAAGGACTGAACTCAGTAGGAGACTCAGTTTGGAAAATAAGCAAGTGAAATTCTGGTTTCAAAATAGAAGAACACAAACGAAGACACAACTGGAACGGCACGAAAATATGATTCTTAGGCAAGAGAATGATAAGCTTCGAGCAGAGAACGTTGTGATTAAGGAAGCACTTTCGAAACCAATCTGTAATACTTGTGGTGGACCAGCAATTCCTGGCCATGTTTCGCTTGAAGAACACCATCTTAGGATCGAAAATGCTCGTTTGAAAGACGAGCTAAGTCGGATTTGTGCTTTGGCTGGTAAGTTTTTGGGGCGACCCCTTTCGCCAAGCTTAGAACTTGCAGTGGGAAGGAATGGAAGAGCTAATTCGGTTGAAAATTTCCCTGCTCTGGGGCTTGACATGGTTGACGGAGCTTCGAGTTTTATGCCTCCTATGCCGCTGAGAGATGGACTTTTTGATCGAACAATGTTTGTTGATCTTGCATTGGCAGCCATGGATGAACTCTTCAAGCTTGTTCACGTAGATAGTCCATTATGGATAAAAAATCAAGATGGTGGAAAAGAGACATTGAATTATGAAGAGTATGCAAGAATGTCTAATCCTTCTATCCGAAATAACCGGCCTGGATTTGTGCGGGAGGCCACGAGAGATTCTCAGATGGTGATCATCAACAGCTTGGCACTTGTCGAGACATTGATGGACACGAATCGGTGGGCACATATGTTTCCTTGCTTGATAGCTAGAGCGGCAACTATTGATACAATATCTAACGGCATGAATGGAACGAGGAATGGCGCTTTACAATTGATCAAAGCAGAGCTTCAAGTCCTTTCTCCGCTGGTTCCTGTTCGTCCGATTAGGTTCCTCCGCTTCTGCAAGCAACATGCTGATGGTTTGTGGGCTGTGGTCGATGTGTCGATTGATATCAACCAAGAAGCTTCCAATTCTAGCCCATTTTTCAGTTGCAGGAAGCTTCCTTCTGGCTGCATCGTGCAAGATATGCCTAATGGCTACTCAAAGGTGACTTGGGTGGAGCATACTGAATATGATGAGACATATATTCATCAACTCTACCGTCCATTAATAAGCTCCGGATTTGGATTTGGTGCTGAGAGATGGCTTGTTACGCTCCAACGACAGTGTGAGTGCTTAGCCATTCTCATATCTTCGTCAATCCCGAACGACGATCCAACAGGAGTTTCTTTGGGTGGTCGGAGAAGCATGTTGAAGCTAGCACAACGAATGGTCGATAACTTCTGCTCGGGGGTTTGTGCTTCGAGTCTGCATAAGTGGGAAAAACTTCTCGTTAGTAACTTGAGCGAAGATGTGAAGGTGATGATGAGAAAAAGCATGGATGATCCGGGTGAACCACCAGGTATCGTATTGAGTGCTGCAACCTCGGTTTGGATTCCCATATCAGAGCAGAGAGTGTTTGAATTCTTAAGAGATGATCGGCTTAGGAGCGAATGGGACATTCTATCAAACGGTGGACCAATGCAAGAGATGGTTCACATTGCGAAGGGTCGAGATCGTGCCAATTGCGTCTCTCTTCTTCGGGCTAGTGCTGTCAATGCACATGAGAGCACAATGTTGATTTTGCAAGAGACATGGTCGGACTCATCTGGGTCTTTGATCGTTTATGCTCCGGTTGACACACCGTCTATCAACTTGGTGATGCACGGGGGAGACTCGGCCTATGTGTCTCTCTTACCGTCTGGATTTTCGATTCTTCATGATGGTCAATCAAACTATTTGGGATCAAACAGCTGTGACGATGGGAGAGGCAATGGAGGTTGCCTACTAACGGTCTCGTTTCAAATTCTGGTGAACAATATTCCTACTGCGAAGCTCACCATGGAATCAGTCGAGACGGTAAATAATCTGATTTCGTGTACAATTAAGAAGATCAAAGATGCCCTTCGAGTAACTTGA 2166 45.11 MEANGEMGLLGDHLEADLVGKLREDGYDSRSGSDVPSGDEHDGSEEQPRRRKKYHRHTPHQIQELENFFKECPHPDEKQRTELSRRLSLENKQVKFWFQNRRTQTKTQLERHENMILRQENDKLRAENVVIKEALSKPICNTCGGPAIPGHVSLEEHHLRIENARLKDELSRICALAGKFLGRPLSPSLELAVGRNGRANSVENFPALGLDMVDGASSFMPPMPLRDGLFDRTMFVDLALAAMDELFKLVHVDSPLWIKNQDGGKETLNYEEYARMSNPSIRNNRPGFVREATRDSQMVIINSLALVETLMDTNRWAHMFPCLIARAATIDTISNGMNGTRNGALQLIKAELQVLSPLVPVRPIRFLRFCKQHADGLWAVVDVSIDINQEASNSSPFFSCRKLPSGCIVQDMPNGYSKVTWVEHTEYDETYIHQLYRPLISSGFGFGAERWLVTLQRQCECLAILISSSIPNDDPTGVSLGGRRSMLKLAQRMVDNFCSGVCASSLHKWEKLLVSNLSEDVKVMMRKSMDDPGEPPGIVLSAATSVWIPISEQRVFEFLRDDRLRSEWDILSNGGPMQEMVHIAKGRDRANCVSLLRASAVNAHESTMLILQETWSDSSGSLIVYAPVDTPSINLVMHGGDSAYVSLLPSGFSILHDGQSNYLGSNSCDDGRGNGGCLLTVSFQILVNNIPTAKLTMESVETVNNLISCTIKKIKDALRVT 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4039526 4042446 - Bpe012148.1 Bpe03g00296 100801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00296 721 Pfam START domain 238 461 IPR002913 GO:0008289
Bpe03g00296 721 MobiDBLite consensus disorder prediction 20 58 - -
Bpe03g00296 721 CDD START_ArGLABRA2_like 234 460 - -
Bpe03g00296 721 SMART HOX_1 50 112 IPR001356 GO:0003677
Bpe03g00296 721 Coils Coil 102 129 - -
Bpe03g00296 721 MobiDBLite consensus disorder prediction 20 49 - -
Bpe03g00296 721 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Bpe03g00296 721 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Bpe03g00296 721 SUPERFAMILY Homeodomain-like 30 108 IPR009057 -
Bpe03g00296 721 CDD homeodomain 51 108 IPR001356 GO:0003677
Bpe03g00296 721 ProSiteProfiles START domain profile. 228 464 IPR002913 GO:0008289
Bpe03g00296 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 719 IPR042160 -
Bpe03g00296 721 SMART START_1 237 461 IPR002913 GO:0008289
Bpe03g00296 721 Pfam Homeodomain 51 106 IPR001356 GO:0003677
Bpe03g00296 721 Gene3D - 38 124 - -
Bpe03g00296 721 SUPERFAMILY Bet v1-like 231 461 - -
Bpe03g00296 721 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 719 - -
Bpe03g00296 721 SUPERFAMILY Bet v1-like 488 716 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00296 Bpe-Chr3:4039526 Bpe14g00999 Bpe-Chr14:7375836 0 dispersed
Bpe03g00296 Bpe-Chr3:4039526 Bpe05g00780 Bpe-Chr5:21118981 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21080 PF01852 START 1.00E-49 CL0209 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00296 K09338 - gmx:100785102 1011.52