Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00300 CTGGCTCTGGAGTGTTATTTAGATTACAACTGCCTGGGACCTGTGCTCCCAATGGCGCCTTCACGGGTTGCTGGAGGGTTGGCACAATCTTCTTCCAGTTCAGGGATTTTCTTCCAAGCAGAGGGGCACTCCCAGGCCATTATTAATTCTCACTTGAGCTCATCTTTTGGTAACTCATCTACTTCAGTCCCTGGAACTGCAAGATCAAATTTGGTTCCAGTCTCGGGGGATTTGAATAATACAGTTTTAAATAGTGTGGCGAACTCTGGTCCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCAAACTCAGCATTTTCAGGTGGGGCCCATCTTCAGAGAAGTGCTAGCATCAATAACGAGTCGTATATGCGGTTGCCCGCATCACCTTTGTCATTCTCATCTAATAATCTTAGTATTTCCGGATCATCAGTTATGGATGGCTCTTCTGTGGTGCAACAAAATTCACAACAAGACCACAATTCCCAACAAATTCCACAGAACCAACTGCTGTCACAGCAAGGTGCATCAAGTGCAACATCATTGCCACCATCACAAACCGGCCAAGTTTCACTTCCTCTTGGTGCACGACTCTCTGGGTCTTTTGTTCCAGATACTGGTAATTTTTCTCAGGTGCAGAAGAAACCACGGTTGGATGCAAAGCAGGAAGATATTCTGCCACAGCAGGTATTGCAGCAGCTATTTCAGAGGCAAGACTCCTTGCAGTTACAAGGACGCAATCCTCAAGTGCAAGCTCTGTTACAACAACAAAGATTACGCCAACAACAGCAGATTTTGCAGTCTATGCCACAGTTGCAGAGAGCTCAGTTACAGCAGCAGCAGCAGCAGCAAATGCAGTTGAGGCAGCAGTTGCAACAGCAGGCAATGCAGCCTAGTTCTCCAATGAAACGACCATATGATGGTGGTATATGTTCTCGTCGGCTGATGCAGTATTTATATCATCAACGACAAAGGCCTCCTGACAATAGCATTGCCTATTGGAGAAAGTTTGTAACAGAGTATTACTCGCCACGCGCAAAGAAACGATGGTGCTTATCATTGTATGATAATGTTGGCCATAATGCACTTGGTGTTTTTCCTCAGGCAGCTATGGATGCATGGCAATGTGATATCTGTGGATCTAAATCCGGAAGAGGATTTGAAGCTACTTATGAAGTACTTCCTAGACTAAATGAGATCAAATTTGGCAGTGGAGTCATCGATGAGCTTCTGTTTTTGGATTTGCCTCGTGAATGTAGATTTAATTCCGGAAATATGATGTTGGAGTACGGAAGAGCTGTTCAAGAGAGTGTTTATGAGCAACTTCGCGTTGTTCGTGAGGGCCAGCTTCGTATCATATTCACTAATGAATTAAAGATATTATCATGGGAGTTTTGTGCTCGGCGCCATGAAGAACTCCTTCCTCGAAGGTTGGTTGCACCACAGGTGAATCAGTTAGTCCAGGTAGCTCAAAAATGCCAGAGTACAATATCTGAAGGTGGATCAGATGTGGTGTCACAGAAAGATTTACTAGCTAACAGCAATATGGTGCTGACAGCTGGCCATCAACTGGCAAAGAGTTTAGAGTTGCAGTCACTTAACGACTTGGGTTTCTCTAAAAGATATGTGAGGTGTTTGCAGATATCAGAAGTTGTCAATAGCATGAAAGATCTTGTCGATTTCTCCCGTGAGCACAAAATTGGGCCTATTGAGGGGTTGAAAAATTATCCTCGCCATGCTGCAGCAGCCAAACTACAGATTAAAAAAATGCAAGAGATGGAACAATTAGCAAGTGTTCAGGGTCTGCCCACTGACCGCAATACTCTTAATAAGTTAATAGCAATGCATCCAAGTCTCAGCAACCAAGTGAATAGCAACCATCAAATGGTCGGTCGAGGAGCTTTGAGTGGCTCTGCCCAAGCTGCTTTGGCGCTCACCACATACCAAAATATACTCATGAGACAGAACTCAATGAACTCAAATCCTAGTTCGCATCAACAGGAGGCGTCATCTTCCTTCAACAATTCTAACCAGATTCCATCCTCTAGCTTCCAAGGTAATGCCTCTTTGATCCCTGGCTCTATGCAGAACTTTCCGGCCAGTGGCTTTTCAAGCCCGAATCTGCCTCCATCTCAGTCCCAGCTGCATGTTCTCACACAAAGGTCCCTGAGCTCTAATAGCCTCTTTCAACAAACCCATCCTCAGGGTGAGGGCAATCAAGCTTTACAGCATCAGATGATCCAGCAGTTTTTACAGATGTCTAATACTGGATCTGGGCCAAACCCAAGCGGCAATATGATTAGAAGTGGTCTTGGATATGGCAGAAGCCCTTCCCTGTCAGCTCCAGCCACTAGTAATCTATCGGGAAGTAATGGCCCTGGGCTGGCTCCGAGTCGTAGCGACAGTTTCAAAGGTGTTTCAATCAGTAACTCGTCTGCAGGCGGTGGAAATAACGGATTCAATCAGAGGACACCGGATTTGTCATCCGATCTTCATTTGCAAGAAGGTATGATGCACGACTTAGCCAATGATTTCTCGGATAATGGGTTTTTTAACAGTGATTTTGATGATGCTATGGATTATGTCTGGAAGGCTTGA 2598 45.03 LALECYLDYNCLGPVLPMAPSRVAGGLAQSSSSSGIFFQAEGHSQAIINSHLSSSFGNSSTSVPGTARSNLVPVSGDLNNTVLNSVANSGPSVGASSLVTDANSAFSGGAHLQRSASINNESYMRLPASPLSFSSNNLSISGSSVMDGSSVVQQNSQQDHNSQQIPQNQLLSQQGASSATSLPPSQTGQVSLPLGARLSGSFVPDTGNFSQVQKKPRLDAKQEDILPQQVLQQLFQRQDSLQLQGRNPQVQALLQQQRLRQQQQILQSMPQLQRAQLQQQQQQQMQLRQQLQQQAMQPSSPMKRPYDGGICSRRLMQYLYHQRQRPPDNSIAYWRKFVTEYYSPRAKKRWCLSLYDNVGHNALGVFPQAAMDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPRECRFNSGNMMLEYGRAVQESVYEQLRVVREGQLRIIFTNELKILSWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTISEGGSDVVSQKDLLANSNMVLTAGHQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLVDFSREHKIGPIEGLKNYPRHAAAAKLQIKKMQEMEQLASVQGLPTDRNTLNKLIAMHPSLSNQVNSNHQMVGRGALSGSAQAALALTTYQNILMRQNSMNSNPSSHQQEASSSFNNSNQIPSSSFQGNASLIPGSMQNFPASGFSSPNLPPSQSQLHVLTQRSLSSNSLFQQTHPQGEGNQALQHQMIQQFLQMSNTGSGPNPSGNMIRSGLGYGRSPSLSAPATSNLSGSNGPGLAPSRSDSFKGVSISNSSAGGGNNGFNQRTPDLSSDLHLQEGMMHDLANDFSDNGFFNSDFDDAMDYVWKA 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4214979 4219781 + Bpe012152.1 Bpe03g00300 100805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00300 865 PANTHER LIM DOMAIN-BINDING PROTEIN 22 165 IPR029005 -
Bpe03g00300 865 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 22 165 - -
Bpe03g00300 865 MobiDBLite consensus disorder prediction 778 827 - -
Bpe03g00300 865 MobiDBLite consensus disorder prediction 144 191 - -
Bpe03g00300 865 Coils Coil 274 297 - -
Bpe03g00300 865 PANTHER LIM DOMAIN-BINDING PROTEIN 205 858 IPR029005 -
Bpe03g00300 865 MobiDBLite consensus disorder prediction 753 827 - -
Bpe03g00300 865 MobiDBLite consensus disorder prediction 656 716 - -
Bpe03g00300 865 Pfam LIM-domain binding protein 314 574 IPR029005 -
Bpe03g00300 865 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 205 858 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01598 Bpe-Chr2:18881124 Bpe03g00300 Bpe-Chr3:4214979 4.60E-114 dispersed
Bpe03g00300 Bpe-Chr3:4214979 Bpe14g00324 Bpe-Chr14:3175490 5.32E-108 dispersed
Bpe03g00133 Bpe-Chr3:1877849 Bpe03g00300 Bpe-Chr3:4214979 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00300 - - pper:18787712 1147.11