Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00324 ATGGGAAGAGGTAGAGTGGTGTTGGAGAGAATAGAAAATAAAATCAATCGTCAAGTCACCTTCTCCAAGAGAAGAAATGGGTTGCTGAAGAAAGCTTACGAGCTTTCTATACTTTGCGATGCTGAAGTTGCCCTCATCATCTTCTCCAGTCGTGGTAAACTCTTTGAATTCTGCAGCTCTGACATGAACGCAATTGTTGAGAGGTATCGTCAGTCTTGTTATACTCAACGAAGCAACGATGTTATAGAAGATGACACCCAGACCATATGTCATGAGGTCTCGAGATTAAAAGTGATATATGAATCTCTTCAATCTTCACAAAGGCAAATTTTGGGCGAGGATCTTGGATCACTTAATCTAAAAGAGTTGCAAAATCTTGAGAAACAGCTGGACAAAACTCTATCAGAAGCTCGACAGAGAAAGACGCAGATGATGATACAACGTTTAGAAGAGCTGCGTAAGAAGGAGCATGACCTTGGAGAGATGAATAACAAATTAAAGTCAAAGCTTGAAGAAGGGGAACAGTCACACTGTTTTCAAGGTCATGATCAACCAAGCAATGCAGTAGCTACTTATGTTGGATTAGGAGGCTGGGAATCTCCAACTGAAGGAGATGAAGGAGGGGCAAGAACAAGAGAGGAGAAAGCTCCACACTTGCAGGAGTTGGTTAATAATGTTAGTCACTGTTGA 690 41.45 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSILCDAEVALIIFSSRGKLFEFCSSDMNAIVERYRQSCYTQRSNDVIEDDTQTICHEVSRLKVIYESLQSSQRQILGEDLGSLNLKELQNLEKQLDKTLSEARQRKTQMMIQRLEELRKKEHDLGEMNNKLKSKLEEGEQSHCFQGHDQPSNAVATYVGLGGWESPTEGDEGGARTREEKAPHLQELVNNVSHC 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4797532 4812057 + Bpe012179.1 Bpe03g00324 100829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00324 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe03g00324 229 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bpe03g00324 229 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 186 - -
Bpe03g00324 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe03g00324 229 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bpe03g00324 229 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe03g00324 229 Coils Coil 120 143 - -
Bpe03g00324 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 - -
Bpe03g00324 229 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Bpe03g00324 229 MobiDBLite consensus disorder prediction 197 229 - -
Bpe03g00324 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe03g00324 229 Coils Coil 149 172 - -
Bpe03g00324 229 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe03g00324 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe03g00324 229 MobiDBLite consensus disorder prediction 205 219 - -
Bpe03g00324 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe03g00324 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe03g00324 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00324 Bpe-Chr3:4797532 Bpe13g00816 Bpe-Chr13:14457272 6.02E-61 dispersed
Bpe07g00511 Bpe-Chr7:10389657 Bpe03g00324 Bpe-Chr3:4797532 1.56E-42 dispersed
Bpe14g00611 Bpe-Chr14:5079086 Bpe03g00324 Bpe-Chr3:4797532 7.40E-44 dispersed
Bpe14g00906 Bpe-Chr14:6756127 Bpe03g00324 Bpe-Chr3:4797532 3.12E-38 dispersed
Bpe05g00919 Bpe-Chr5:22171779 Bpe03g00324 Bpe-Chr3:4797532 1.13E-61 transposed
Bpe03g00105 Bpe-Chr3:1595961 Bpe03g00324 Bpe-Chr3:4797532 1.11E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21086 PF01486 K-box 4.10E-26 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00324 K09264 - qsu:112034717 263.848