Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00330 GGTAAAGCGTTAATGGCGATTAAGGCCTCTTTCAGCAACTTAGCAAACGTGTTGCTAGACTGGAATGATGCTCAGGATAGTGATTTTTGTGCATGGCGGGGAGTTCTTTGCGATAATATCAGTCTCTCGGTTGCGTCTTTAAATCTTTCCAACTTGAACCTGGGTGGGGAAATGTCAGCAGCCATTGGAGATTTGAGAAATTTACAGTCCATTGATCTTCAGGGTAATAAACTGACAGGACAAATTCCCGATGAGATTGGCAATTGCGGATTTCTTGTCCATCTTGATTTATCTGATAATCTGCTTTATGGAGACATACCATTTTCAGTATCCAAGCTGAAGCAACTTGAGTTTCTAAATTTGAAGAACAATCAGTTGAGCGGGCCTATTCCTTCAACCCTTACCCAAATTCCAAACTTGAAGACTCTCGACCTTGCTCGTAACCAGCTGACTGGTGAGATTCCCAGATTAATATATTGGAATGAAGTTCTACAATACCTTGGTCTGCGAGGCAATTATTTGACGGGAACGTTATCCCCCGATATGTGCCAACTTACAGGCTTGTGGTACTTTGATGTACGAAGCAATAACCTTACTGGCACCATACCAGACAGCATTGGGAACTGCACGAGTTTTGAAATTTTGGATATTTCTTACAACCAGATATCTGGGGTGATTCCTTTCAACATTGGTTTTTTACAAGTCGCTACTCTATCCCTCCAAGGAAATAGATTGACTGGGAAGATACCTGAGGTGATTGGTTTGATGCAGGCTCTTGCTGTCCTGGATTTGAGTGAGAATGAGCTAGAAGGGCCTATACCACCAATTCTTGGCAATTTGTCTTATACCGGCAAACTATACCTCCATGGAAACAAGCTGAGTGGTCCAATTCCTCCTGAGCTGGGCAATATGTCTAAACTAAGCTACTTGCAATTAAATGACAATCAACTGGTTGGGAAAATTCCAGCTGAGCTTGGCAAACTTGATCAATTGTTTGAATTGAATTTAGCCAATAATTCCCTTGACGGTCCGATACCTCATAATATAAGCTCCTGCACGGCTTTGAATCAATTCAATGTTCATGGTAATCTCCTCAGTGGACCGATCCCTTCCGGGTTTCAGAATCTAGAAAGCTTAACATACTTAAATCTTTCGGCAAACAATTTCCAGGGAAGGATACCAGTTGAGCTAGGGCGCATAATAAATCTTGACACACTGGATCTTTCAAGCAACAATTTTACTGGTCACATACCAGCTTCGGTTGGTGATTTGGAGCATCTTCTTACCCTAAATTTGAGTAAAAATCTTCTTGGAGGGGCATTGCCTGCAGAATTCGGAAATCTCAGAAGTATACAAATCATTGATATGTCGGATAATTTTCTCTCTGGAAGAATTCCTTCAGAATTTGGTCAGTTACAGAATCTTATGCAACTGATTCTGAATGATAACAACTTGCAAGGAAAGATTCCAGATCAGCTGACAAACTGCTTCAGCCTTGTTGTTTTGAATGTGTCTTTCAACAATTTATCTGGAGTCATTCCTCCGATGAACAACTTCTCGAGGTTTTCTCCCGACAGCTTTGTCGGAAATCCTATGTTATGTGGCAATTGGCTGGGTTCAAGCTGTGGTCCTTTTTATCCAAAATCTAGAGCAATATTCTCTCGAACTGCAGTTGTGTGTATGACAATCGGCTTCATTGTGCTCCTGGTGATGGTGATTGTTGCAGTTTACAAATCCAACCAACCGAACCATTTTATGAAGAGTCCTCCTAAGCTTGTAGTTCTTCAGATGGACATGGCAATTCACACCTACGATGATATAATGAGAGTCACGGAGAATCTGAGTGAGAAGTACATTATAGGATATGGAGCCTCGAGTACAGTGTATAAATGCGTATTGAAGAATTGTCGTCCTATTGCAATTAAGCGACTCTACAATCAGTATCAGCACAATTTGCTAGAGTTTGAGACCGAGCTCGAAACAGTCGGGAGTATAAGGCACAGAAACCTTGTTAGCTTGCATGGTTATTCCCTATCTCCCTTTGGAAATCTTCTGTTCTACGACTACATGGAAAATGGATCTTTGTGGGATCTTCTTCATGGACCATCAAAGAAGGTAAAACTGGATTGGGAAGCGCGGTTGAAGATAGCCGTGGGAGCTGCACAAGGACTTGCTTATCTACATCATGATTGCAACCCTCGGATAATTCACCGAGATATTAAATCCTCAAATATCTTGGTGGATGAGAATTTTGATGCCCATCTTTCCGATTTTGGAATTGCCAAATCCATCCCCACAGCAAAAACTCATGCCTTGACTTATGTACTTGGGACAATTGGTTATATCGATCCGGAATACGCTCGAACATCTCGTCTCAATGAAAAATCTGACGTCTACAGCTTCGGAATTGTACTTCTCGAGCTACTTACTGGAAAAAAGGCAGTGGACAATGAATGTAACTTGCATCAAGTGATAATGTCAAAGGCGGATAATAATACTGTCATGGAGGCAGTTGATCCTGAGGTTTCTGTCACTTGCATGGATTTGTCTCATGTTAGGAAGACCTTTCAACTTGCCCTTCTATGCACGAAGAGGGCCCCATCGGAGAGACCAACAATGCACGAGGTGGCGAGGGTTCTGGTTTCGCTTCTTCCAGCTCCGCCGACGAAAATGATAGATTATGCAAAATCTGTGATCGTCAAGGGACAACAACAGATGAGATTCCCACCACCGACGTTTGAACCGGAGAAGAGCTCCTCCGATGCACAGTGGTTTGTTCGTTTTGGTGAAGTTATGTCGAAAAACACC 2808 42.31 GKALMAIKASFSNLANVLLDWNDAQDSDFCAWRGVLCDNISLSVASLNLSNLNLGGEMSAAIGDLRNLQSIDLQGNKLTGQIPDEIGNCGFLVHLDLSDNLLYGDIPFSVSKLKQLEFLNLKNNQLSGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNYLTGTLSPDMCQLTGLWYFDVRSNNLTGTIPDSIGNCTSFEILDISYNQISGVIPFNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLSGPIPPELGNMSKLSYLQLNDNQLVGKIPAELGKLDQLFELNLANNSLDGPIPHNISSCTALNQFNVHGNLLSGPIPSGFQNLESLTYLNLSANNFQGRIPVELGRIINLDTLDLSSNNFTGHIPASVGDLEHLLTLNLSKNLLGGALPAEFGNLRSIQIIDMSDNFLSGRIPSEFGQLQNLMQLILNDNNLQGKIPDQLTNCFSLVVLNVSFNNLSGVIPPMNNFSRFSPDSFVGNPMLCGNWLGSSCGPFYPKSRAIFSRTAVVCMTIGFIVLLVMVIVAVYKSNQPNHFMKSPPKLVVLQMDMAIHTYDDIMRVTENLSEKYIIGYGASSTVYKCVLKNCRPIAIKRLYNQYQHNLLEFETELETVGSIRHRNLVSLHGYSLSPFGNLLFYDYMENGSLWDLLHGPSKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDIKSSNILVDENFDAHLSDFGIAKSIPTAKTHALTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNECNLHQVIMSKADNNTVMEAVDPEVSVTCMDLSHVRKTFQLALLCTKRAPSERPTMHEVARVLVSLLPAPPTKMIDYAKSVIVKGQQQMRFPPPTFEPEKSSSDAQWFVRFGEVMSKNT 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5231798 5236897 - Bpe025368 Bpe03g00330 100835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00330 936 ProSiteProfiles Leucine-rich repeat profile. 139 161 IPR001611 GO:0005515
Bpe03g00330 936 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 902 - -
Bpe03g00330 936 Pfam Leucine Rich repeat 208 224 IPR001611 GO:0005515
Bpe03g00330 936 Pfam Leucine Rich repeat 138 153 IPR001611 GO:0005515
Bpe03g00330 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Bpe03g00330 936 SUPERFAMILY Protein kinase-like (PK-like) 593 880 IPR011009 -
Bpe03g00330 936 ProSiteProfiles Protein kinase domain profile. 614 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00330 936 Gene3D Ribonuclease Inhibitor 273 544 IPR032675 -
Bpe03g00330 936 CDD STKc_IRAK 620 880 - -
Bpe03g00330 936 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 1 902 - -
Bpe03g00330 936 SUPERFAMILY L domain-like 3 291 - -
Bpe03g00330 936 SMART serkin_6 614 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00330 936 Pfam Leucine rich repeat 402 459 IPR001611 GO:0005515
Bpe03g00330 936 Gene3D Phosphorylase Kinase; domain 1 577 689 - -
Bpe03g00330 936 SUPERFAMILY L domain-like 234 539 - -
Bpe03g00330 936 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Bpe03g00330 936 Pfam Leucine rich repeat N-terminal domain 2 38 IPR013210 -
Bpe03g00330 936 Gene3D Ribonuclease Inhibitor 162 272 IPR032675 -
Bpe03g00330 936 Gene3D Ribonuclease Inhibitor 1 161 IPR032675 -
Bpe03g00330 936 SMART LRR_typ_2 113 136 IPR003591 -
Bpe03g00330 936 SMART LRR_typ_2 472 496 IPR003591 -
Bpe03g00330 936 SMART LRR_typ_2 137 161 IPR003591 -
Bpe03g00330 936 SMART LRR_typ_2 65 89 IPR003591 -
Bpe03g00330 936 SMART LRR_typ_2 304 328 IPR003591 -
Bpe03g00330 936 SMART LRR_typ_2 185 209 IPR003591 -
Bpe03g00330 936 SMART LRR_typ_2 376 400 IPR003591 -
Bpe03g00330 936 SMART LRR_typ_2 424 447 IPR003591 -
Bpe03g00330 936 SMART LRR_typ_2 256 280 IPR003591 -
Bpe03g00330 936 Pfam Leucine Rich Repeat 67 89 IPR001611 GO:0005515
Bpe03g00330 936 Pfam Protein kinase domain 617 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00330 936 Gene3D Transferase(Phosphotransferase) domain 1 690 896 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00511 Bpe-Chr2:3351760 Bpe03g00330 Bpe-Chr3:5231798 0 dispersed
Bpe03g00330 Bpe-Chr3:5231798 Bpe04g00109 Bpe-Chr4:752715 0 dispersed
Bpe11g01426 Bpe-Chr11:10605800 Bpe03g00330 Bpe-Chr3:5231798 5.93E-11 dispersed
Bpe01g00703 Bpe-Chr1:5268927 Bpe03g00330 Bpe-Chr3:5231798 5.83E-07 transposed
Bpe02g01325 Bpe-Chr2:16874754 Bpe03g00330 Bpe-Chr3:5231798 3.09E-15 transposed
Bpe03g00831 Bpe-Chr3:28226836 Bpe03g00330 Bpe-Chr3:5231798 3.10E-07 transposed
Bpe06g00058 Bpe-Chr6:683712 Bpe03g00330 Bpe-Chr3:5231798 6.29E-24 transposed
Bpe03g00330 Bpe-Chr3:5231798 Bpe07g00139 Bpe-Chr7:985173 4.35E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63229 PF00069 Pkinase 2.00E-42 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00330 K20718 - vvi:100256609 1588.16