Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe03g00359 | ACCCAAATCACTCAAACAATGAAACTTTCCTTTCCTTTCTCTCTCAGTATCTTCTTCTTCTTCCTCCAGATAACCCTAGTTCTATCTGCAACAAGTCTACCATTTCAGCTTCTCTCTTTGCTTTCCCTTCAAACCTCGCTCAGAGATCCTCTGTCGTCTCTACATGACTGGGACCCTTCACTCACCTTCTCCAAGTCTGATTTTCAAGACCCTGTTTGGTGTACTTGGTCTGGCATCAAATGCCATCCCGATACAGCTCAGATCACCAAACTAGACCTCTCCCATCGAAATCTTTCCGGGATAATCCCACCTGAGATCAAGTACTTGTCGAACTTACTGCACTTGAATTTGAGTGGAAACAACTTCAATGGTCCTCTTCAAGCCGCCATTTTTGAGCTGAGCGAGCTTAGGACCCTTGATATTAGCCACAACAACTTCAATTCAACTTTCCCACCTGGGATTTCCAAGCTCAAGTTCTTGAGAATTTTCAGTGGTTATAGCAACAGTTTCATTGGTCCACTGCCAGAAGAACTCGCGCGGCTTCAATATCTTGAGCAGCTTAACCTCGGTGGAAGCTACTTTGACGGCGCTGTTCCCACAACTTACGGACAATTTCCGAGATTAAAGTTCATGTGCTTGGCTGGAAATCTTTTGCAAGGATCAATACCTCCTCAACTAGGATATTTATCCCGGCTAGAGCGCATGGAAATCGGCTACAACTCATTTTCCGCTTTTGTACCATCTGAATTTTCTTCATTGGTGATGTTGAAATACTTGGACATTTCTTCAGCTAATCTTTCAGGCAATCTACCTCAAGATCTTGGAAATCTAACGTCCCTGGAGACACTTTTGCTCTTCAGGAACCAAATTACAGGCGAAATCCCTGAAAGTTTTAGTAATTTGAAAGCTCTGAAAGTGCTTGATTTGTCTGACAATCAACTTTCAGGAGCAATTCCTGAACAATTGGGTAATCTGAAGGAACTGACGCAGTTGAGCTTGATGGACAACCATTTGAGTGGGGAAATTTCACAAGCATTTGGTGAGCTCCCCAACCTCGATACGTTATTCCTATGGAACAATTCACTCACCGGAGTACTACCTCAGACACTCGGCACCAACAACAAATTGCAGAAGCTCGATGTCTCTTCAAACTTCCTCACCGGTCCGATTCCTTCCGGTCTCTGCAACGGAAACAAGCTTTTCAAGCTCATCCTCTTCTCCAATAAGTTCGTCAATGGCCTCCCCGTCTCCCTAGCAAACTGTTTTTCTTTATCGCGCTTTCGCGTCCAAGACAACCAACTCAACGGTTCCATCCCTTCCGGTTTCGGACTCTTACCAAACCTAACTTTCTTCGACATGAGCAGCAATAATTTCTCAGGAGAAATTCCTCAAGATTTCGCCAATGCCGTCAAATTAGAGTACTTAAACATATCAAATAACTCTTTCAACACATCCTTACCGGAAAACATATGGAGTTCCTCTAGCTTGCAGATTTTTTCCGCTAGCTCAGCACAAATCACAGGGAAAATCCCCGATTTCATCGGTTGCAAAAGCGTCTACAAAATCGAACTACAAGACAATTTCTTGAATAGTAGCGTACCATGGACCATATGCCACTGCGAAAAACTTCTGAGCATTAACTTGAGCAGAAATTCACTCTCCGGCATAATACCATGGGAGATCTCCACTCTTGCTTTCATCACCGCCATCGATTTATCGCATAATTTTCTCACTGGTTCTATCCCTTCAAATTTTCAAAACTGCAGCACCCTCGAAACATTCAATGTTTCGTACAATTTGCTCACCGGGCCAATTCCCTCCTCCGGAATTGTCTTCCCAAATCTACACCCATCTTCATTCTCTGGCAACGAGGGCCTATGCGGCGTCGTTTTGGCAAAACCATGTGGGACCCCAATTGCTGACAGGGCAATAAAGGTCCGTCCAAGTCAGCCACATCGGACAGCTGGTGCCATCATGTGGATTATGGCGGCAGCCTTTGGTATCGGGTTGTTTTTACTCGTGGCAGGGACTCGATGCTTCCAGGCGAACTACAGTCATCAATTTCGGAGCAATCACGAGACTGGATCGTGGAAAATCACCGCGTTTCAACGCTTGAATTTTACGGCGGATGACGTGTTGGAGTGCCTGTCGACGACAGAGAAGATCATAGGAATGGGGTCCACTGGAACCGTTTACAAGGCAGAAATGCCAAGTGGCGAGATCATAGCGGTGAAGAAGCTGTGGGGAAAGAATAAAGATGAGATCATACGACAGCGAGGGAGTTTGGTCGAAGTGGAGGTGTTAGGAAATGTGAGGCATAGAAACATTGTGAGATTGTTAGGGTGCTGCAGCAATATGGACTGCACCATGCTGCTCTACGAATACATGCCAAATGGTAACTTAGAAGATTTATTACACGGAAAAAATAAGGGTGAAAATCTAATCGCTGATTGGGTAACGAGGTACAAAATAGCTTTGGGAGTGGCCCAGGGGATATGCTATCTCCACCATGACTGTCACCCTGTCATTCTTCATCGTGATCTCAAGCCTAGTAACATCTTATTGGACGGTGAGATGGAGGCGAGAGTGGCTGATTTCGGTGTTGCCAAGCTGATCGAGAGACACGAATCAATGTCTGTGATCGCTGGGTCCTATGGTTACATTGCCCCGGAATATGCTTACACGCTTCAAGTAGACGAGAAAAGCGACATATACAGCTACGGCGTCGTTTTAATGGAGATTTTGAGCGGGAAACGGTCCGTCAATTCAGAATTCGGCGACGGGAACAGCATCGTCGACTGGGTGAGATCAAAAATCAAGGTCAAGGATGGCATTATTGGAATTTTGGACAAGAATGCTGGAGCTTCATGTTCTTCTGTCCGGGAAGAAATGATCCAAATGCTCAGAATTGCGTTGCTCTGTACTAGCCGGAATCCGGCGGACAGACCGTCGATGAGAGACGTTGTTTTGATGCTGCAGGAGGCAAAGCCGAAGAGGAAATTGCCGGAAAGTGTGGTTGCCACTGGAAACACATGCGGTGTTGGGAGAGAGAATGGAGTTAGTGGTCGTCGGGGAAGTAGCGACGGGGATATTCTCTTGACGCAAAAGCCGGCACTGGAATGTTAA | 3126 | 45.84 | TQITQTMKLSFPFSLSIFFFFLQITLVLSATSLPFQLLSLLSLQTSLRDPLSSLHDWDPSLTFSKSDFQDPVWCTWSGIKCHPDTAQITKLDLSHRNLSGIIPPEIKYLSNLLHLNLSGNNFNGPLQAAIFELSELRTLDISHNNFNSTFPPGISKLKFLRIFSGYSNSFIGPLPEELARLQYLEQLNLGGSYFDGAVPTTYGQFPRLKFMCLAGNLLQGSIPPQLGYLSRLERMEIGYNSFSAFVPSEFSSLVMLKYLDISSANLSGNLPQDLGNLTSLETLLLFRNQITGEIPESFSNLKALKVLDLSDNQLSGAIPEQLGNLKELTQLSLMDNHLSGEISQAFGELPNLDTLFLWNNSLTGVLPQTLGTNNKLQKLDVSSNFLTGPIPSGLCNGNKLFKLILFSNKFVNGLPVSLANCFSLSRFRVQDNQLNGSIPSGFGLLPNLTFFDMSSNNFSGEIPQDFANAVKLEYLNISNNSFNTSLPENIWSSSSLQIFSASSAQITGKIPDFIGCKSVYKIELQDNFLNSSVPWTICHCEKLLSINLSRNSLSGIIPWEISTLAFITAIDLSHNFLTGSIPSNFQNCSTLETFNVSYNLLTGPIPSSGIVFPNLHPSSFSGNEGLCGVVLAKPCGTPIADRAIKVRPSQPHRTAGAIMWIMAAAFGIGLFLLVAGTRCFQANYSHQFRSNHETGSWKITAFQRLNFTADDVLECLSTTEKIIGMGSTGTVYKAEMPSGEIIAVKKLWGKNKDEIIRQRGSLVEVEVLGNVRHRNIVRLLGCCSNMDCTMLLYEYMPNGNLEDLLHGKNKGENLIADWVTRYKIALGVAQGICYLHHDCHPVILHRDLKPSNILLDGEMEARVADFGVAKLIERHESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVNSEFGDGNSIVDWVRSKIKVKDGIIGILDKNAGASCSSVREEMIQMLRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLPESVVATGNTCGVGRENGVSGRRGSSDGDILLTQKPALEC | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 8525689 | 8529142 | + | Bpe012229.1 | Bpe03g00359 | 100864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe03g00359 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 723 | 746 | IPR017441 | GO:0005524 | |
| Bpe03g00359 | 1041 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 | 13 | 1011 | - | - | |
| Bpe03g00359 | 1041 | SMART | serkin_6 | 717 | 996 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bpe03g00359 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 843 | 855 | IPR008271 | GO:0004672|GO:0006468 | |
| Bpe03g00359 | 1041 | Gene3D | Ribonuclease Inhibitor | 345 | 637 | IPR032675 | - | |
| Bpe03g00359 | 1041 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 13 | 1011 | - | - | |
| Bpe03g00359 | 1041 | SMART | LRR_typ_2 | 133 | 157 | IPR003591 | - | |
| Bpe03g00359 | 1041 | SMART | LRR_typ_2 | 301 | 325 | IPR003591 | - | |
| Bpe03g00359 | 1041 | SMART | LRR_typ_2 | 349 | 372 | IPR003591 | - | |
| Bpe03g00359 | 1041 | SMART | LRR_typ_2 | 445 | 468 | IPR003591 | - | |
| Bpe03g00359 | 1041 | SMART | LRR_typ_2 | 277 | 300 | IPR003591 | - | |
| Bpe03g00359 | 1041 | SMART | LRR_typ_2 | 229 | 252 | IPR003591 | - | |
| Bpe03g00359 | 1041 | SMART | LRR_typ_2 | 470 | 493 | IPR003591 | - | |
| Bpe03g00359 | 1041 | SUPERFAMILY | L domain-like | 376 | 629 | - | - | |
| Bpe03g00359 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 796 | 1009 | - | - | |
| Bpe03g00359 | 1041 | Pfam | Leucine Rich Repeat | 569 | 588 | IPR001611 | GO:0005515 | |
| Bpe03g00359 | 1041 | Gene3D | Ribonuclease Inhibitor | 156 | 246 | IPR032675 | - | |
| Bpe03g00359 | 1041 | Gene3D | Ribonuclease Inhibitor | 247 | 344 | IPR032675 | - | |
| Bpe03g00359 | 1041 | Pfam | Protein kinase domain | 719 | 989 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bpe03g00359 | 1041 | SUPERFAMILY | RNI-like | 90 | 459 | - | - | |
| Bpe03g00359 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 719 | 992 | IPR011009 | - | |
| Bpe03g00359 | 1041 | Gene3D | Ribonuclease Inhibitor | 37 | 155 | IPR032675 | - | |
| Bpe03g00359 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 717 | 996 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bpe03g00359 | 1041 | Pfam | Leucine rich repeat | 279 | 338 | IPR001611 | GO:0005515 | |
| Bpe03g00359 | 1041 | Pfam | Leucine rich repeat | 350 | 410 | IPR001611 | GO:0005515 | |
| Bpe03g00359 | 1041 | Pfam | Leucine rich repeat | 87 | 146 | IPR001611 | GO:0005515 | |
| Bpe03g00359 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 682 | 795 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe02g02150 | Bpe-Chr2:22802576 | Bpe03g00359 | Bpe-Chr3:8525689 | 0 | dispersed | |
| Bpe03g00359 | Bpe-Chr3:8525689 | Bpe11g01825 | Bpe-Chr11:14604793 | 0 | dispersed | |
| Bpe10g00026 | Bpe-Chr10:386710 | Bpe03g00359 | Bpe-Chr3:8525689 | 0 | dispersed | |
| Bpe12g00678 | Bpe-Chr12:12404316 | Bpe03g00359 | Bpe-Chr3:8525689 | 4.48E-07 | dispersed | |
| Bpe03g00359 | Bpe-Chr3:8525689 | Bpe03g00927 | Bpe-Chr3:28950384 | 0 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 63230 | PF00069 | Pkinase | 5.60E-48 | CL0016 | Bpe | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe03g00359 | - | - | gra:105764887 | 1499.95 |