Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00360 ATGAGAGATTTTAGGGAATTTTCTGCACCATCTTCTCGTTGCGGGGCAGGAATCATCAGAAGTATCCGTTTGGAGAACTTCATGTGCCATAGTAATTTGGAAATTGAGCTTGGCGAGTGGGTTAACTTTATCACTGGTCAAAATGGAAGTGGAAAGAGCGCGATATTAACGGCTTTATGCGTTGCATTTGGGTGTCGAGCTAAAGGGACCCAAAGGGCATCTACTTTAAAGGATTTCATAAAAACTGGTTGCAGCTATGCCATAGTTCAGGTCCAATTAAGAAACCAAGGTGAAGAAGCTTTTAAGTCGGAAATATATGGAAAAAGGGTTTCCAGTCGGAAAGATGATCTTCGTGAGATAGTTGAACATTTTAATATTGATGTGGAGAATCCTTGTATGATAATGAGTCAGGACAAAAGTAGAGAGTTTCTGCATTCTGGAAATGACAAAGATAAATTTCAGTTCTTTTTCAAGGCTACACTTCTTCACCAAGTTAACGATCTCTTGAAGAATGTTTTTGAACAATTGAGATCTGCAAGTGCTCTAGTTGATGATTTGGAAGCCTCAATAAAACCTGTTGAGAAAGAACTTAGTGAGCTGCAAGGAAAGATAAAGAACATGGAGCATGTAGAAGAAATATCTCAACAGATCGAGCAAGTAAGTAAGAAGCTAGCATGGTCATGGGTATATGATGTGGACAGACAACTCCAGCAGCAAAGCACAAGGATTGCAAAGCTAAAAGACCGCATTCCTACGTGCCAAGCAAAAATTGATCGTCAATTGGATCTGGTGGAAAAATTGAGAAAATGCTTTGCTGAGAAAAAAGATCAGATAGCACGCATGATGGACAAAACTTCAGAAGTGAGAAGTATGAAGGATGAACTGCAAGAAACTCTTACTCAGGCAACAAAGGAGAAACTGTATCTTGAGGATGAGCATGGTCGTAAGATGAAGCACATGCAGAAGATGCTGCAGCGCATCAGAATGCTTGAGCAGCAAGTCCATAATATTCATGACCAGCATATTAGAGACACACAGGCTGAGGAGTCTGAAATAGAGGAAAAGTTGAAGGAGCTCCAGTCCGAGGTTGATTTAGCTCATTCTATGCTAACAAGGTTAAGGGAAGAGGAAAGTGCATTATTTGAGTGCTTATCTGCCGGAAAGAGTGAAATCAAAAGAATGGTTGTTGAGATTGAGGAATATGAGAAAAGACATCGTGAAATATCTTACTCAATTCAAGAGCTTTCGCAACATCAAATCAACAAGGTTACAGCTTTTGGTGGTGATAGAGTTATTAACCTGTTACGAGCTATTGAGGCACAGTGCTATAGATTCCAACAGCCACCAATTGGTCCTATTGGTGCCCATGTGAACTTGGTTAATGGTGACACATGGGCTCCTGCAGTGGATAATGCTCTTGGGAAGTTGCTCAATGCTTTCATTGTTACAAATCATAGAGATTTTCTTCTTTTGAGAGGCTGTGCTAAGGAAGCTAACTATAAGAACCTTCAAATTATCATATACGACTTTTCAAGACCAAGGTTAGACATACCAACTCACATGCTTCCTCAAACAAGGCACCCTACGACTCTTTCAGTCATCCATTCTGAAAATCCTACAGTCATTAATGTCTTGGTGGATATGGGGAGTGCTGAGAGACAAGTGCTTGTTAAGGACTACGATGTGGGTAAAGCTGTTGCATTTGAACAGAAGATCTCAAATCTGAAGGAAGTCCACACTTTAGACGGCTATAAAATGTTTAAACGCGGTTCAGTTCAGACAATTCTCCCTCCCCCCAAGTGGCGCAAAACTGGGCGCCTTTGTAGTTCTTATGATGATCAAATTAACGGTCTTGAGAAAGATGCATCGAAATTAAAAGACGAAAGTTATCAATGTAGGAGGCAGAAGAGAATTGCAAAAGTGGAACTTGGAGCACTCGAAGGCAAGTTGAACAGTACAAAGAAAAGGCGTGAGAGTGCAGAACGGGTTTTAATGTCTAAGAATTTAATGCTGGAAGATTTAAAGAACTCTCGTGCTGCAGAAGAAAATAATTCTAAAGCATCGTCAGTTGACGAGCTTCACGGAGAAATTTCTAAAGTCCAGGAGGAGATACAAGAAAGTGAGATTTTGTTGGAAAGGCTGAGAGTCAAGGCAAATGAAGCAAAAACTAAGGCCAAAGATCTTAAACTATCTTTTGAGAATCTCTGTGAGTCAGCAAAAGGGGACATTGATGCATTTGAAGAGGCAGAAGGAGATCTGATGCAGATAGAACGAGATCTAAATTCTGCAGAAAAGGAGAAGCGTCATTATGAAGTTATTATGGCTAACAAGGTTCTTCCCGATATCATCGAAGCAGAGCGAGAATATCAGGATCTTGAAAGGCTCAGAGAGAAAAATTACAATAAAGCTTCTATTATTTGTCTGGAAAGTGATATTGAAGCTTCAAGCAATTCAGATGGAAGCATGCCAGAACAATTAAGTGCTCACTTAACTAGACTAAAAAAGCAACTTCAAAATGAAAGCCAGCGATTTTCTGATTCTATAGATGACTTGAGAATGAAATATGAGAAAAAAGAACGTACAATCTTGAGAAAGAGGCTGACTTACAAAGGCTTTCGAGAAAAATTGAATGCATGTGAGAAAGCTCTCGATCAGCGGTGGGGCAAGTTTCAAAGAAATGCAAATCTTTTGAAGCGGCAACTGACTTGGCAATTTAATGGTCATTTAAGAAAGAAAGGGATCAGTGGCCATATTAAAGTTAGTTATGAAGAAAAAACGTTGGCAGTTGAGGTGAAGATGCCCCAGGATGCATCGAGCAGTACTGTTCGTGACACTAGAGGACTTTCAGGTGGAGAACGATCATTTTCAACTTTATGTTTTGCATTAGCACTTCACGAAATGACCGAGGCCCCATTTCGAGCGATGGATGAGTTTGATGTATTTATGGATGCGGTTAGTCGTAAAATCAGCTTAGACACTCTTGTTGATTTCGCGTTAGCCCAAGGATCTCAATGGATATTTATCACACCTCATGATATCAGGTAA 3045 40.07 MRDFREFSAPSSRCGAGIIRSIRLENFMCHSNLEIELGEWVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSYAIVQVQLRNQGEEAFKSEIYGKRVSSRKDDLREIVEHFNIDVENPCMIMSQDKSREFLHSGNDKDKFQFFFKATLLHQVNDLLKNVFEQLRSASALVDDLEASIKPVEKELSELQGKIKNMEHVEEISQQIEQVSKKLAWSWVYDVDRQLQQQSTRIAKLKDRIPTCQAKIDRQLDLVEKLRKCFAEKKDQIARMMDKTSEVRSMKDELQETLTQATKEKLYLEDEHGRKMKHMQKMLQRIRMLEQQVHNIHDQHIRDTQAEESEIEEKLKELQSEVDLAHSMLTRLREEESALFECLSAGKSEIKRMVVEIEEYEKRHREISYSIQELSQHQINKVTAFGGDRVINLLRAIEAQCYRFQQPPIGPIGAHVNLVNGDTWAPAVDNALGKLLNAFIVTNHRDFLLLRGCAKEANYKNLQIIIYDFSRPRLDIPTHMLPQTRHPTTLSVIHSENPTVINVLVDMGSAERQVLVKDYDVGKAVAFEQKISNLKEVHTLDGYKMFKRGSVQTILPPPKWRKTGRLCSSYDDQINGLEKDASKLKDESYQCRRQKRIAKVELGALEGKLNSTKKRRESAERVLMSKNLMLEDLKNSRAAEENNSKASSVDELHGEISKVQEEIQESEILLERLRVKANEAKTKAKDLKLSFENLCESAKGDIDAFEEAEGDLMQIERDLNSAEKEKRHYEVIMANKVLPDIIEAEREYQDLERLREKNYNKASIICLESDIEASSNSDGSMPEQLSAHLTRLKKQLQNESQRFSDSIDDLRMKYEKKERTILRKRLTYKGFREKLNACEKALDQRWGKFQRNANLLKRQLTWQFNGHLRKKGISGHIKVSYEEKTLAVEVKMPQDASSSTVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIR 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8598346 8643618 + Bpe012230.1 Bpe03g00360 100865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00360 1014 Coils Coil 608 628 - -
Bpe03g00360 1014 CDD ABC_SMC6_euk 936 1013 - -
Bpe03g00360 1014 CDD ABC_SMC6_euk 19 150 - -
Bpe03g00360 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 108 - -
Bpe03g00360 1014 Coils Coil 834 854 - -
Bpe03g00360 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 107 1013 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bpe03g00360 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 12 108 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bpe03g00360 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 1009 IPR027417 -
Bpe03g00360 1014 Coils Coil 169 203 - -
Bpe03g00360 1014 Coils Coil 690 731 - -
Bpe03g00360 1014 Gene3D - 18 269 IPR027417 -
Bpe03g00360 1014 Gene3D - 783 1013 IPR027417 -
Bpe03g00360 1014 Coils Coil 746 773 - -
Bpe03g00360 1014 Pfam AAA domain 21 224 IPR038729 GO:0140664
Bpe03g00360 1014 Coils Coil 643 663 - -
Bpe03g00360 1014 Coils Coil 342 376 - -
Bpe03g00360 1014 Coils Coil 384 404 - -
Bpe03g00360 1014 Coils Coil 782 802 - -
Bpe03g00360 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 107 1013 - -
Bpe03g00360 1014 Coils Coil 292 312 - -
Bpe03g00360 1014 Coils Coil 320 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00360 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 1471.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00360 Bpe-Chr3:8598346 Bpe12g00558 Bpe-Chr12:11422644 3.96E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00558 . 1 1047 Structural Maintenance of Chromosomes family AT5G15920 64.4 0.0e+00 1300.4
Bpe03g00360 . 16 1013 Structural Maintenance of Chromosomes family AT5G07660 59.8 0.0e+00 1146.7
Bpe03g00360 . 13 1013 Structural Maintenance of Chromosomes family AT5G61460 62.7 0.0e+00 1204.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00360 Bpe_Chr03 FPKM 3.569648 3.83162 130.695557 136.108719 766.391663 744.137146 731.266541 26.351961 23.623835 22.079523