Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00360 ATGAGAGATTTTAGGGAATTTTCTGCACCATCTTCTCGTTGCGGGGCAGGAATCATCAGAAGTATCCGTTTGGAGAACTTCATGTGCCATAGTAATTTGGAAATTGAGCTTGGCGAGTGGGTTAACTTTATCACTGGTCAAAATGGAAGTGGAAAGAGCGCGATATTAACGGCTTTATGCGTTGCATTTGGGTGTCGAGCTAAAGGGACCCAAAGGGCATCTACTTTAAAGGATTTCATAAAAACTGGTTGCAGCTATGCCATAGTTCAGGTCCAATTAAGAAACCAAGGTGAAGAAGCTTTTAAGTCGGAAATATATGGAAAAAGGGTTTCCAGTCGGAAAGATGATCTTCGTGAGATAGTTGAACATTTTAATATTGATGTGGAGAATCCTTGTATGATAATGAGTCAGGACAAAAGTAGAGAGTTTCTGCATTCTGGAAATGACAAAGATAAATTTCAGTTCTTTTTCAAGGCTACACTTCTTCACCAAGTTAACGATCTCTTGAAGAATGTTTTTGAACAATTGAGATCTGCAAGTGCTCTAGTTGATGATTTGGAAGCCTCAATAAAACCTGTTGAGAAAGAACTTAGTGAGCTGCAAGGAAAGATAAAGAACATGGAGCATGTAGAAGAAATATCTCAACAGATCGAGCAAGTAAGTAAGAAGCTAGCATGGTCATGGGTATATGATGTGGACAGACAACTCCAGCAGCAAAGCACAAGGATTGCAAAGCTAAAAGACCGCATTCCTACGTGCCAAGCAAAAATTGATCGTCAATTGGATCTGGTGGAAAAATTGAGAAAATGCTTTGCTGAGAAAAAAGATCAGATAGCACGCATGATGGACAAAACTTCAGAAGTGAGAAGTATGAAGGATGAACTGCAAGAAACTCTTACTCAGGCAACAAAGGAGAAACTGTATCTTGAGGATGAGCATGGTCGTAAGATGAAGCACATGCAGAAGATGCTGCAGCGCATCAGAATGCTTGAGCAGCAAGTCCATAATATTCATGACCAGCATATTAGAGACACACAGGCTGAGGAGTCTGAAATAGAGGAAAAGTTGAAGGAGCTCCAGTCCGAGGTTGATTTAGCTCATTCTATGCTAACAAGGTTAAGGGAAGAGGAAAGTGCATTATTTGAGTGCTTATCTGCCGGAAAGAGTGAAATCAAAAGAATGGTTGTTGAGATTGAGGAATATGAGAAAAGACATCGTGAAATATCTTACTCAATTCAAGAGCTTTCGCAACATCAAATCAACAAGGTTACAGCTTTTGGTGGTGATAGAGTTATTAACCTGTTACGAGCTATTGAGGCACAGTGCTATAGATTCCAACAGCCACCAATTGGTCCTATTGGTGCCCATGTGAACTTGGTTAATGGTGACACATGGGCTCCTGCAGTGGATAATGCTCTTGGGAAGTTGCTCAATGCTTTCATTGTTACAAATCATAGAGATTTTCTTCTTTTGAGAGGCTGTGCTAAGGAAGCTAACTATAAGAACCTTCAAATTATCATATACGACTTTTCAAGACCAAGGTTAGACATACCAACTCACATGCTTCCTCAAACAAGGCACCCTACGACTCTTTCAGTCATCCATTCTGAAAATCCTACAGTCATTAATGTCTTGGTGGATATGGGGAGTGCTGAGAGACAAGTGCTTGTTAAGGACTACGATGTGGGTAAAGCTGTTGCATTTGAACAGAAGATCTCAAATCTGAAGGAAGTCCACACTTTAGACGGCTATAAAATGTTTAAACGCGGTTCAGTTCAGACAATTCTCCCTCCCCCCAAGTGGCGCAAAACTGGGCGCCTTTGTAGTTCTTATGATGATCAAATTAACGGTCTTGAGAAAGATGCATCGAAATTAAAAGACGAAAGTTATCAATGTAGGAGGCAGAAGAGAATTGCAAAAGTGGAACTTGGAGCACTCGAAGGCAAGTTGAACAGTACAAAGAAAAGGCGTGAGAGTGCAGAACGGGTTTTAATGTCTAAGAATTTAATGCTGGAAGATTTAAAGAACTCTCGTGCTGCAGAAGAAAATAATTCTAAAGCATCGTCAGTTGACGAGCTTCACGGAGAAATTTCTAAAGTCCAGGAGGAGATACAAGAAAGTGAGATTTTGTTGGAAAGGCTGAGAGTCAAGGCAAATGAAGCAAAAACTAAGGCCAAAGATCTTAAACTATCTTTTGAGAATCTCTGTGAGTCAGCAAAAGGGGACATTGATGCATTTGAAGAGGCAGAAGGAGATCTGATGCAGATAGAACGAGATCTAAATTCTGCAGAAAAGGAGAAGCGTCATTATGAAGTTATTATGGCTAACAAGGTTCTTCCCGATATCATCGAAGCAGAGCGAGAATATCAGGATCTTGAAAGGCTCAGAGAGAAAAATTACAATAAAGCTTCTATTATTTGTCTGGAAAGTGATATTGAAGCTTCAAGCAATTCAGATGGAAGCATGCCAGAACAATTAAGTGCTCACTTAACTAGACTAAAAAAGCAACTTCAAAATGAAAGCCAGCGATTTTCTGATTCTATAGATGACTTGAGAATGAAATATGAGAAAAAAGAACGTACAATCTTGAGAAAGAGGCTGACTTACAAAGGCTTTCGAGAAAAATTGAATGCATGTGAGAAAGCTCTCGATCAGCGGTGGGGCAAGTTTCAAAGAAATGCAAATCTTTTGAAGCGGCAACTGACTTGGCAATTTAATGGTCATTTAAGAAAGAAAGGGATCAGTGGCCATATTAAAGTTAGTTATGAAGAAAAAACGTTGGCAGTTGAGGTGAAGATGCCCCAGGATGCATCGAGCAGTACTGTTCGTGACACTAGAGGACTTTCAGGTGGAGAACGATCATTTTCAACTTTATGTTTTGCATTAGCACTTCACGAAATGACCGAGGCCCCATTTCGAGCGATGGATGAGTTTGATGTATTTATGGATGCGGTTAGTCGTAAAATCAGCTTAGACACTCTTGTTGATTTCGCGTTAGCCCAAGGATCTCAATGGATATTTATCACACCTCATGATATCAGGTAA 3045 40.07 MRDFREFSAPSSRCGAGIIRSIRLENFMCHSNLEIELGEWVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSYAIVQVQLRNQGEEAFKSEIYGKRVSSRKDDLREIVEHFNIDVENPCMIMSQDKSREFLHSGNDKDKFQFFFKATLLHQVNDLLKNVFEQLRSASALVDDLEASIKPVEKELSELQGKIKNMEHVEEISQQIEQVSKKLAWSWVYDVDRQLQQQSTRIAKLKDRIPTCQAKIDRQLDLVEKLRKCFAEKKDQIARMMDKTSEVRSMKDELQETLTQATKEKLYLEDEHGRKMKHMQKMLQRIRMLEQQVHNIHDQHIRDTQAEESEIEEKLKELQSEVDLAHSMLTRLREEESALFECLSAGKSEIKRMVVEIEEYEKRHREISYSIQELSQHQINKVTAFGGDRVINLLRAIEAQCYRFQQPPIGPIGAHVNLVNGDTWAPAVDNALGKLLNAFIVTNHRDFLLLRGCAKEANYKNLQIIIYDFSRPRLDIPTHMLPQTRHPTTLSVIHSENPTVINVLVDMGSAERQVLVKDYDVGKAVAFEQKISNLKEVHTLDGYKMFKRGSVQTILPPPKWRKTGRLCSSYDDQINGLEKDASKLKDESYQCRRQKRIAKVELGALEGKLNSTKKRRESAERVLMSKNLMLEDLKNSRAAEENNSKASSVDELHGEISKVQEEIQESEILLERLRVKANEAKTKAKDLKLSFENLCESAKGDIDAFEEAEGDLMQIERDLNSAEKEKRHYEVIMANKVLPDIIEAEREYQDLERLREKNYNKASIICLESDIEASSNSDGSMPEQLSAHLTRLKKQLQNESQRFSDSIDDLRMKYEKKERTILRKRLTYKGFREKLNACEKALDQRWGKFQRNANLLKRQLTWQFNGHLRKKGISGHIKVSYEEKTLAVEVKMPQDASSSTVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIR 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8598346 8643618 + Bpe012230.1 Bpe03g00360 100865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00360 1014 Coils Coil 608 628 - -
Bpe03g00360 1014 CDD ABC_SMC6_euk 936 1013 - -
Bpe03g00360 1014 CDD ABC_SMC6_euk 19 150 - -
Bpe03g00360 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 108 - -
Bpe03g00360 1014 Coils Coil 834 854 - -
Bpe03g00360 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 107 1013 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bpe03g00360 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 12 108 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bpe03g00360 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 1009 IPR027417 -
Bpe03g00360 1014 Coils Coil 169 203 - -
Bpe03g00360 1014 Coils Coil 690 731 - -
Bpe03g00360 1014 Gene3D - 18 269 IPR027417 -
Bpe03g00360 1014 Gene3D - 783 1013 IPR027417 -
Bpe03g00360 1014 Coils Coil 746 773 - -
Bpe03g00360 1014 Pfam AAA domain 21 224 IPR038729 GO:0140664
Bpe03g00360 1014 Coils Coil 643 663 - -
Bpe03g00360 1014 Coils Coil 342 376 - -
Bpe03g00360 1014 Coils Coil 384 404 - -
Bpe03g00360 1014 Coils Coil 782 802 - -
Bpe03g00360 1014 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 107 1013 - -
Bpe03g00360 1014 Coils Coil 292 312 - -
Bpe03g00360 1014 Coils Coil 320 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00360 Bpe-Chr3:8598346 Bpe12g00558 Bpe-Chr12:11422644 3.96E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00360 K22804 - csv:101208493 1471.45