Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00368 ATGGAAGAATTTAGGATCCCTCGTAATCACTACAGAAGCTCAAGATACGACGATTTCATGCCCTACTTAACTGAGCAATGGGGAGACTTGCCGTTTAAGGTTGACGACGCCGAAGATATGATCGTCTTTAATGCTCTATACGACGCCGTTTCTTATGGCTGGTCGCCTATTGATTCTGTCCTACCCTCTGCTACTGTAATAGCAAGCGAAAAGCTGGAACACAAGCGAACAGAGCCGATGATAGGGCGGCGGTACATAGGGGTCAGGAGAAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCAACTAGAAACGGGGTGAGAGTTTGGCTCGGCACGTATCAGACGGCTGAGAGTGCGGCTTTGGCTTATGATCGTGCTGCTTTCGAAATGCGTGGCGCCAAAGCTTTGCTTAATTTTCCAAACTGCATTGCGATCGATGAACCAGAGCCTGTAAGAATTCCGGCCAAGCGCAGAGTGCCGGAGCCAGCATTCGGACCTGGGCGGCGAAGTTGGTCGGCTAAGAAAATCAAAAGCTTGCCTGAAGCGAGGAGTGAAATGGGAAGTTCTCCGATGTGCTCAAGTTGA 591 50.93 MEEFRIPRNHYRSSRYDDFMPYLTEQWGDLPFKVDDAEDMIVFNALYDAVSYGWSPIDSVLPSATVIASEKLEHKRTEPMIGRRYIGVRRRPWGKFAAEIRDSTRNGVRVWLGTYQTAESAALAYDRAAFEMRGAKALLNFPNCIAIDEPEPVRIPAKRRVPEPAFGPGRRSWSAKKIKSLPEARSEMGSSPMCSS 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9705570 9706160 + Bpe012243.1 Bpe03g00368 100873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00368 196 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Bpe03g00368 196 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Bpe03g00368 196 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Bpe03g00368 196 MobiDBLite consensus disorder prediction 158 196 - -
Bpe03g00368 196 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Bpe03g00368 196 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Bpe03g00368 196 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Bpe03g00368 196 PANTHER DNA-BINDING DOMAIN 62 168 IPR044808 GO:0003700|GO:0009873
Bpe03g00368 196 PANTHER DNA-BINDING DOMAIN 11 58 IPR044808 GO:0003700|GO:0009873
Bpe03g00368 196 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Bpe03g00368 196 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Bpe03g00368 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 11 58 - -
Bpe03g00368 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 62 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00368 Bpe-Chr3:9705570 Bpe05g00559 Bpe-Chr5:19748914 2.62E-51 dispersed
Bpe14g01247 Bpe-Chr14:9403953 Bpe03g00368 Bpe-Chr3:9705570 2.42E-32 dispersed
Bpe03g00066 Bpe-Chr3:1036893 Bpe03g00368 Bpe-Chr3:9705570 1.31E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21088 PF00847 AP2 1.80E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00368 K09286 K13432 vvi:100244163 196.823