Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00449 ATGTGGCAGTTGGGGCTGACCAGTAGAGAATCGTATCCTGAGCGTCCTGGTGTACCTAACTGTGTATATTATATGCGAACTGGGTTCTGTGGGTATGGAAGCAGATGTCGTTTCAATCATCCTCGCGATCGTGCTGCAGTCGTAGCTGCTGTAAGAGCCACCGGGGATTACCCAGAACGAGTAGGGGAACCTGTGTGTCAGTATTATTTGAAAACTGGAACGTGTAAATTTGGTGCATCCTGCAAGTTTCACCATCCAAAACATGGAGGCGGATCCCTAAACCAGGCTCCTCTTAATATCTATGGATACCCACTTCGACCGGGTGAGAGAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAAACAGTTGGCTCATCCATGCCAAATACCAATCCTCAATATTATCCATCGGTGCAGTCTCCTTCAATTCCTATGCCTGACCAATATGGAGTGGCATCCACTAGCGTGAGAGTAGCCAGGCCACCTATTTTACCTGGTTCTTATATGCAAGGGACCTATGGTCCTGTTTTGCTTCCCCCAGGAGTTGTTCCAATTCCAGGATGGAGTCCATACTCGGCCCCTGTAAGCCCTGCCTTATCTCCGGGTGCGCCACACACAGTTGGAGCAACTTCTGTTTATGGAGTAGCCCAGCTGTCTCCTACAACCTCATCTCATCCACGACCCTATTCCTCTTTACCTTCATCTGTTGGCCCTTCTAGCAGTAGGGAACAGTTGTTTCCAGAGAGACCTGGTGAACCTGAATGCCAGTATTACATAAGAACTGGTGACTGCAAGTTTGGCCTAGCTTGTCGATATCATCATCCTCACAACCGGATTTTACCTAGGACAAATTGTGTTCTTAGTGCACTTGGCCTTCCCTTGCGACCGTTTCTTATTCATATTTGTAATTTGCAGGGGGTTGAGCCTTGTACATTTTACTTGCAAAACGGACAGTGCAAATTCGGATCAACCTGTAAGTTTGATCATCCTATGGGGACAATGAGATACAGTCCATCAGCCTCTTCTCTCATCAACATGCCTGTTGCTCCTTATCCCGTGGGGTCCCTGCTTGCCACTTTGGCTCCTTCATCATCTTCTTCCGAGCTTAAACCAGAGCTGATGTCTGGATCAAGGAAAGAATCATATTCAGCTAGATTGCCTTCTTCTGGCAGTACCTCTAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTAGTGTGCAACTTTCTAGTCAAAGTACTGCTCCTTTGAACAACAGCAGGAACACTAGACAAGGTGGTGAGACAAGGCATTCGAATTAG 1341 46.53 MWQLGLTSRESYPERPGVPNCVYYMRTGFCGYGSRCRFNHPRDRAAVVAAVRATGDYPERVGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLNQAPLNIYGYPLRPGERECSYYLKTGQCKFGITCKFHHPQTVGSSMPNTNPQYYPSVQSPSIPMPDQYGVASTSVRVARPPILPGSYMQGTYGPVLLPPGVVPIPGWSPYSAPVSPALSPGAPHTVGATSVYGVAQLSPTTSSHPRPYSSLPSSVGPSSSREQLFPERPGEPECQYYIRTGDCKFGLACRYHHPHNRILPRTNCVLSALGLPLRPFLIHICNLQGVEPCTFYLQNGQCKFGSTCKFDHPMGTMRYSPSASSLINMPVAPYPVGSLLATLAPSSSSSELKPELMSGSRKESYSARLPSSGSTSSSTVGLIYSQTGSSVQLSSQSTAPLNNSRNTRQGGETRHSN 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23531545 23535275 - Bpe012354.1 Bpe03g00449 100954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00449 446 Gene3D - 311 363 - -
Bpe03g00449 446 SUPERFAMILY CCCH zinc finger 19 44 IPR036855 GO:0046872
Bpe03g00449 446 SMART c3hfinal6 316 343 IPR000571 GO:0046872
Bpe03g00449 446 SMART c3hfinal6 15 42 IPR000571 GO:0046872
Bpe03g00449 446 SMART c3hfinal6 106 133 IPR000571 GO:0046872
Bpe03g00449 446 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Bpe03g00449 446 SMART c3hfinal6 60 87 IPR000571 GO:0046872
Bpe03g00449 446 SUPERFAMILY CCCH zinc finger 63 87 IPR036855 GO:0046872
Bpe03g00449 446 ProSiteProfiles Zinc finger C3H1-type profile. 316 344 IPR000571 GO:0046872
Bpe03g00449 446 SUPERFAMILY CCCH zinc finger 319 347 IPR036855 GO:0046872
Bpe03g00449 446 SUPERFAMILY CCCH zinc finger 109 133 IPR036855 GO:0046872
Bpe03g00449 446 Gene3D - 235 298 - -
Bpe03g00449 446 Gene3D - 14 88 - -
Bpe03g00449 446 ProSiteProfiles Zinc finger C3H1-type profile. 60 88 IPR000571 GO:0046872
Bpe03g00449 446 ProSiteProfiles Zinc finger C3H1-type profile. 106 134 IPR000571 GO:0046872
Bpe03g00449 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 87 IPR000571 GO:0046872
Bpe03g00449 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 17 42 IPR000571 GO:0046872
Bpe03g00449 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 318 343 IPR000571 GO:0046872
Bpe03g00449 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Bpe03g00449 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 108 133 IPR000571 GO:0046872
Bpe03g00449 446 ProSiteProfiles Zinc finger C3H1-type profile. 15 43 IPR000571 GO:0046872
Bpe03g00449 446 MobiDBLite consensus disorder prediction 378 446 - -
Bpe03g00449 446 Gene3D - 89 142 - -
Bpe03g00449 446 SUPERFAMILY CCCH zinc finger 266 290 IPR036855 GO:0046872
Bpe03g00449 446 PANTHER PROTEIN PHOSPHATASE RELATED 1 426 - -
Bpe03g00449 446 MobiDBLite consensus disorder prediction 393 440 - -
Bpe03g00449 446 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Bpe03g00449 446 MobiDBLite consensus disorder prediction 231 254 - -
Bpe03g00449 446 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 1 426 - -
Bpe03g00449 446 MobiDBLite consensus disorder prediction 231 261 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00449 Bpe11g00186 CCT
Bpe03g00449 Bpe11g00186 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00449 Bpe-Chr3:23531545 Bpe05g00851 Bpe-Chr5:21716389 3.62E-13 dispersed
Bpe13g00218 Bpe-Chr13:10219885 Bpe03g00449 Bpe-Chr3:23531545 5.73E-52 dispersed
Bpe11g00186 Bpe-Chr11:1278824 Bpe03g00449 Bpe-Chr3:23531545 0 wgd
Bpe13g00654 Bpe-Chr13:13357877 Bpe03g00449 Bpe-Chr3:23531545 1.23E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21091 PF00642 zf-CCCH 6.90E-10 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00449 - - tcc:18613492 700.664