Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00451 ATGGCAACAAACAGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAGAGGGATCAAAATCTTCAACTTCACAGACGAGGGCATAATCTACCATGGAAACTTCGCCAGAGAACAACAGCCGAAGTTAAGAAACGGGTCTACATTTGCCCCGAGCCATCGTGCGTTCATCACAACCCGGCTCGAGCTCTCGGAGATCTGACTGGAATCAAAAAACATTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCTAAGAAATATGCTGTTCAATCTGACTGGAAGGCTCATCAAAAGACATGTGGGACAAGAGAATACAAATGTGACTGCGGAACAATCTTTTCCAGGAGAGATAGCTTTATTACACACAGGGCCTTTTGCGATGCATTAGCAGAAGAAAACAACAAAGTAAACCAAGAAATGATGAACAACAACAGCAACATGTTACCCTCATCAAACTTGCAAACCCTAAGAATGGCGGAATCCTTATTAGGATCAGCACCTCCTCAAATGGCTGAGCAACTGATGAACACCTGCGAGACCAAAAACCCTCTCAAGTTCCTCTCCCAAGACTTCGTTCCGATGCCATTTAAGACGATGAACATGTCGACCCTCTTCCCCAACACCCCCAGAAACGTCTCGTCGTCTTCTTCTTCTTCAGCCCTGCAACTCAGTACTTCTACCTCTTCTTCTACCTTCAGCTACCTTCACGACTGTAAAAACGGTGCCCAAGTTTCTGGTCTAATACCTGCGATGTCGGCTACTGCGTTGCTACAGAAAGCAGCTCAGATGGGAGCCACTGCAAGCAATAGTATGAACTCACCGATGTTGCAGAAAAGCTTCATTTCTACAACAATGGCCGCTCATGATCAGTTGTCTCCCATCAGAACTTTGTACTCCGCTACAATGCAGCAGCACAGCGCTCCACACGATAACTTCCAACCGCCTTCCGATCAATCGGGCATGGTCGGCATTAACCACCCTCTCAACTACGCAAATTTAAGCTGCGCGTCACCGGTCATTGATAATGGAATGTTCAGCCAAATGATGATGGGAGGATCGGAAAATCAGAGGCGTAGAATTCTGAGAGATTTAGAGCAAGATGACTGTAACAGTAACGGGATGGTTGGAGAGAAAGAGTGGAGCTGGTTCTCAAGATATGGAGGGAGTAGTGGCAGCAATGAGACGTTGACTCTAGATTTATTGGGAAAAGGAGGGTCGAGGAAAGGAAACTTGAATCAGCAAGAAGAGCAACAGCGACTGGATTTGCCGATTTTAAATCCGTTTCAGGAAAAGATTTCGAGTGGAGAGTCGGGAATGGAGGAACCAGTTTGGGAGGTTTGA 1353 46.05 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTAEVKKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQEMMNNNSNMLPSSNLQTLRMAESLLGSAPPQMAEQLMNTCETKNPLKFLSQDFVPMPFKTMNMSTLFPNTPRNVSSSSSSSALQLSTSTSSSTFSYLHDCKNGAQVSGLIPAMSATALLQKAAQMGATASNSMNSPMLQKSFISTTMAAHDQLSPIRTLYSATMQQHSAPHDNFQPPSDQSGMVGINHPLNYANLSCASPVIDNGMFSQMMMGGSENQRRRILRDLEQDDCNSNGMVGEKEWSWFSRYGGSSGSNETLTLDLLGKGGSRKGNLNQQEEQQRLDLPILNPFQEKISSGESGMEEPVWEV 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23599642 23601355 - Bpe012356.1 Bpe03g00451 100956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00451 450 SMART c2h2final6 47 77 IPR013087 -
Bpe03g00451 450 SMART c2h2final6 82 102 IPR013087 -
Bpe03g00451 450 SMART c2h2final6 6 28 IPR013087 -
Bpe03g00451 450 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Bpe03g00451 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Bpe03g00451 450 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Bpe03g00451 450 Coils Coil 130 150 - -
Bpe03g00451 450 Gene3D Classic Zinc Finger 61 141 - -
Bpe03g00451 450 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 426 - -
Bpe03g00451 450 Gene3D Classic Zinc Finger 6 50 - -
Bpe03g00451 450 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 426 - -
Bpe03g00451 450 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00451 Bpe-Chr3:23599642 Bpe04g00209 Bpe-Chr4:1434848 2.54E-102 dispersed
Bpe03g00451 Bpe-Chr3:23599642 Bpe09g00021 Bpe-Chr9:171971 1.44E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21092 PF00096 zf-C2H2 0.0044 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00451 - - pvy:116116231 483.411